1 dCache_1#1
33-266 aa · 234 aa · 41.0% of protein
Raw token
dCache_1:33:0.00000448:266:248:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S80_RS03980
Histidine kinase, Classic
Hungatella sp. L36 · GCF_014288035
ClassHKTypeClassicLength571 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014288035#H8S80_RS03980Stable P2CS identifier used across views.
GenomeGCF_014288035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length571 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage491 / 571 aa (86.0%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa571 aa
Domain-by-domain annotation4 items
2 HAMP#2
285-354 aa · 70 aa · 12.3% of protein
Raw token
HAMP:285:0.000000000763:354:70:693 His_kinase#3
369-448 aa · 80 aa · 14.0% of protein
Raw token
His_kinase:369:3.97e-28:448:80:804 HATPase_c#4
465-571 aa · 107 aa · 18.7% of protein
Raw token
HATPase_c:465:0.000000012:571:110:109- Raw architecture: dCache_1:33:0.00000448:266:248:195#HAMP:285:0.000000000763:354:70:69#His_kinase:369:3.97e-28:448:80:80#HATPase_c:465:0.000000012:571:110:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014288035::NZ_JACOPC010000001.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span918025-921314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S80_03980RefSeq proteinWP_147338519.1
Context group ID
GCF_014288035::NZ_JACOPC010000001.1::G00024Context members
H8S80_RS03980H8S80_RS03985
Partner locus tags
H8S80_RS03980H8S80_RS03985
Partner old locus tags
H8S80_03980H8S80_03985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_147338519.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S80_RS03980Primary locus identifier stored in the genes table.
Old locus tagH8S80_03980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPC010000001.1Sequence record reported by the local genomic context database.
Genomic interval918 025-919 740 nt1 716 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span918 025-921 314 ntGCF_014288035::NZ_JACOPC010000001.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014288035::NZ_JACOPC010000001.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span918 025-921 314 nt3 290 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
918 025 nt921 314 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S80_RS03980GCF_014288035#H8S80_RS03980
HKClassicCurrent focus
918 025-919 740 nt · Forward (+)
H8S80_RS03985GCF_014288035#H8S80_RS03985
RRunclassified
919 773-921 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS16205Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1178457
Simplified PFAM architecture for HKOC_1178457
PFAM domain coverage: 181 / 577 aa (31.4%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[369-446] | HATPase_c[466-568]
- Domain count: 2
- Matched identifier: HKOC_1178457
- Positioned domains: His_kinase 369-446 ; HATPase_c 466-568
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS16205
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 049 · GCF_014288035
AssemblyASM1428803v1 · Contighaploid
Genome composition7 705 063 bp · 49,0% GCHungatella sp. L36
Signal transduction countsGenes 294 · HK 146 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key