1 dCache_1#1
184-293 aa · 110 aa · 18.5% of protein
Raw token
dCache_1:184:0.0000000868:293:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S80_RS00070
Histidine kinase, Classic
Hungatella sp. L36 · GCF_014288035
ClassHKTypeClassicLength594 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014288035#H8S80_RS00070Stable P2CS identifier used across views.
GenomeGCF_014288035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length594 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage364 / 594 aa (61.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa594 aa
Domain-by-domain annotation4 items
2 HAMP#2
311-377 aa · 67 aa · 11.3% of protein
Raw token
HAMP:311:0.0000000052:377:67:693 His_kinase#3
394-473 aa · 80 aa · 13.5% of protein
Raw token
His_kinase:394:1.27e-28:473:80:804 HATPase_c#4
485-591 aa · 107 aa · 18.0% of protein
Raw token
HATPase_c:485:1.24e-17:591:114:109- Raw architecture: dCache_1:184:0.0000000868:293:113:195#HAMP:311:0.0000000052:377:67:69#His_kinase:394:1.27e-28:473:80:80#HATPase_c:485:1.24e-17:591:114:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014288035::NZ_JACOPC010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9818-13124Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S80_00070RefSeq proteinWP_002600936.1
Context group ID
GCF_014288035::NZ_JACOPC010000001.1::G00001Context members
H8S80_RS00070H8S80_RS00075
Partner locus tags
H8S80_RS00070H8S80_RS00075
Partner old locus tags
H8S80_00070H8S80_00075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002600936.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N3I8W1Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N3I8W1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S80_RS00070Primary locus identifier stored in the genes table.
Old locus tagH8S80_00070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPC010000001.1Sequence record reported by the local genomic context database.
Genomic interval9 818-11 602 nt1 785 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 818-13 124 ntGCF_014288035::NZ_JACOPC010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014288035::NZ_JACOPC010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span9 818-13 124 nt3 307 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 818 nt13 124 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S80_RS00070GCF_014288035#H8S80_RS00070
HKClassicCurrent focus
9 818-11 602 nt · Reverse (-)
H8S80_RS00075GCF_014288035#H8S80_RS00075
RRunclassified
11 586-13 124 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000371445#HMPREF1093_RS05590Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1087213
Simplified PFAM architecture for HKOC_1087213
PFAM domain coverage: 428 / 594 aa (72.1%)
1 aa594 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[49-292] | His_kinase[395-473] | HATPase_c[488-592]
- Domain count: 3
- Matched identifier: HKOC_1087213
- Positioned domains: dCache_1 49-292 ; His_kinase 395-473 ; HATPase_c 488-592
Cluster members and taxonomy
Representative gene: GCF_000371445#HMPREF1093_RS05590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 049 · GCF_014288035
AssemblyASM1428803v1 · Contighaploid
Genome composition7 705 063 bp · 49,0% GCHungatella sp. L36
Signal transduction countsGenes 294 · HK 146 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key