1 Response_reg#1
3-116 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:3:1.46e-21:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S80_RS00625
Response regulator, unclassified
Hungatella sp. L36 · GCF_014288035
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014288035#H8S80_RS00625Stable P2CS identifier used across views.
GenomeGCF_014288035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 530 aa (28.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
491-528 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:491:0.00000000419:528:38:42- Raw architecture: Response_reg:3:1.46e-21:116:114:111#HTH_AraC:491:0.00000000419:528:38:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014288035::NZ_JACOPC010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140732-144273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S80_00625RefSeq proteinWP_117631441.1
Context group ID
GCF_014288035::NZ_JACOPC010000001.1::G00002Context members
H8S80_RS00625H8S80_RS00630
Partner locus tags
H8S80_RS00625H8S80_RS00630
Partner old locus tags
H8S80_00625H8S80_00630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631441.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P2T9Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P2T9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S80_RS00625Primary locus identifier stored in the genes table.
Old locus tagH8S80_00625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPC010000001.1Sequence record reported by the local genomic context database.
Genomic interval140 732-142 324 nt1 593 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 732-144 273 ntGCF_014288035::NZ_JACOPC010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014288035::NZ_JACOPC010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span140 732-144 273 nt3 542 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 732 nt144 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S80_RS00625GCF_014288035#H8S80_RS00625
RRunclassifiedCurrent focus
140 732-142 324 nt · Reverse (-)
H8S80_RS00630GCF_014288035#H8S80_RS00630
HKClassic
142 348-144 273 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS11795Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0111757
Simplified PFAM architecture for RROC_0111757
PFAM domain coverage: 193 / 530 aa (36.4%)
1 aa530 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-116] | HTH_18[450-528]
- Domain count: 2
- Matched identifier: RROC_0111757
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; HTH_18 450-528 ; HTH_18 450-528
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS11795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 049 · GCF_014288035
AssemblyASM1428803v1 · Contighaploid
Genome composition7 705 063 bp · 49,0% GCHungatella sp. L36
Signal transduction countsGenes 294 · HK 146 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key