1 Response_reg#1
4-117 aa · 114 aa · 22.0% of protein
Raw token
Response_reg:4:7.78e-29:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S80_RS01045
Response regulator, unclassified
Hungatella sp. L36 · GCF_014288035
ClassRRTypeunclassifiedLength518 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014288035#H8S80_RS01045Stable P2CS identifier used across views.
GenomeGCF_014288035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length518 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 518 aa (37.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa518 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
425-466 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:425:0.00000000845:466:42:423 HTH_AraC#3
480-516 aa · 37 aa · 7.1% of protein
Raw token
HTH_AraC:480:0.0000000239:516:37:42- Raw architecture: Response_reg:4:7.78e-29:117:114:111#HTH_AraC:425:0.00000000845:466:42:42#HTH_AraC:480:0.0000000239:516:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014288035::NZ_JACOPC010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span243770-247112Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S80_01045RefSeq proteinWP_117631523.1
Context group ID
GCF_014288035::NZ_JACOPC010000001.1::G00004Context members
H8S80_RS01040H8S80_RS01045
Partner locus tags
H8S80_RS01040H8S80_RS01045
Partner old locus tags
H8S80_01040H8S80_01045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631523.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NZY8Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NZY8_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S80_RS01045Primary locus identifier stored in the genes table.
Old locus tagH8S80_01045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPC010000001.1Sequence record reported by the local genomic context database.
Genomic interval245 556-247 112 nt1 557 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span243 770-247 112 ntGCF_014288035::NZ_JACOPC010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014288035::NZ_JACOPC010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span243 770-247 112 nt3 343 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
243 770 nt247 112 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S80_RS01040GCF_014288035#H8S80_RS01040
HKClassic
243 770-245 578 nt · Forward (+)
H8S80_RS01045GCF_014288035#H8S80_RS01045
RRunclassifiedCurrent focus
245 556-247 112 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS12215Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0129534
Simplified PFAM architecture for RROC_0129534
PFAM domain coverage: 269 / 518 aa (51.9%)
1 aa518 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-115] | GGDEF_2[201-278] | HTH_18[439-517]
- Domain count: 3
- Matched identifier: RROC_0129534
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; GGDEF_2 201-278 ; GGDEF_2 201-278 ; HTH_18 439-517 ; HTH_18 439-517
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS12215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 049 · GCF_014288035
AssemblyASM1428803v1 · Contighaploid
Genome composition7 705 063 bp · 49,0% GCHungatella sp. L36
Signal transduction countsGenes 294 · HK 146 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key