1 dCache_1#1
186-292 aa · 107 aa · 16.7% of protein
Raw token
dCache_1:186:0.000018:292:113:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S80_RS00630
Histidine kinase, Classic
Hungatella sp. L36 · GCF_014288035
ClassHKTypeClassicLength641 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014288035#H8S80_RS00630Stable P2CS identifier used across views.
GenomeGCF_014288035Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Hungatella
Domain signature
Compact overview inferred from the domain field
dCache_1His_kinaseHATPase_c
Protein length641 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage312 / 641 aa (48.7%)Merged over positioned domains only.
Domain description1 dCache_1,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa641 aa
Domain-by-domain annotation3 items
2 His_kinase#2
402-477 aa · 76 aa · 11.9% of protein
Raw token
His_kinase:402:3.17e-25:477:76:803 HATPase_c#3
500-628 aa · 129 aa · 20.1% of protein
Raw token
HATPase_c:500:0.0000257:628:129:109- Raw architecture: dCache_1:186:0.000018:292:113:195#His_kinase:402:3.17e-25:477:76:80#HATPase_c:500:0.0000257:628:129:109
- Domain description: 1 dCache_1,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014288035::NZ_JACOPC010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span140732-144273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S80_00630RefSeq proteinWP_117631443.1
Context group ID
GCF_014288035::NZ_JACOPC010000001.1::G00002Context members
H8S80_RS00625H8S80_RS00630
Partner locus tags
H8S80_RS00625H8S80_RS00630
Partner old locus tags
H8S80_00625H8S80_00630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117631443.1Primary protein accession used for annex mappings.
UniProt accessionA0A374P0V1Primary UniProt accession resolved in the annex database.
UniProt IDA0A374P0V1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S80_RS00630Primary locus identifier stored in the genes table.
Old locus tagH8S80_00630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPC010000001.1Sequence record reported by the local genomic context database.
Genomic interval142 348-144 273 nt1 926 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span140 732-144 273 ntGCF_014288035::NZ_JACOPC010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014288035::NZ_JACOPC010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span140 732-144 273 nt3 542 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 732 nt144 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S80_RS00625GCF_014288035#H8S80_RS00625
RRunclassified
140 732-142 324 nt · Reverse (-)
H8S80_RS00630GCF_014288035#H8S80_RS00630
HKClassicCurrent focus
142 348-144 273 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003437645#DXC88_RS11800Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0918996
Simplified PFAM architecture for HKOC_0918996
PFAM domain coverage: 76 / 641 aa (11.9%)
1 aa641 aa
His_kinase
- Simplified architecture: His_kinase
- Raw architecture: His_kinase[402-477]
- Domain count: 1
- Matched identifier: HKOC_0918996
- Positioned domains: His_kinase 402-477
Cluster members and taxonomy
Representative gene: GCF_003437645#DXC88_RS11800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 049 · GCF_014288035
AssemblyASM1428803v1 · Contighaploid
Genome composition7 705 063 bp · 49,0% GCHungatella sp. L36
Signal transduction countsGenes 294 · HK 146 · RR 145CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusHungatella
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Hungatella
Related genes
Preview from the same derived genome key