1 GGDEF#1
177-321 aa · 145 aa · 21.0% of protein
Raw token
GGDEF:177:2.35e-32:321:156:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S40_RS02160
Response regulator, RpfG family
Ruminococcus hominis · GCF_014287355
ClassRRTypeRpfGLength692 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287355#H8S40_RS02160Stable P2CS identifier used across views.
GenomeGCF_014287355Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length692 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage373 / 692 aa (53.9%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa692 aa
Domain-by-domain annotation3 items
2 Response_reg#2
347-453 aa · 107 aa · 15.5% of protein
Raw token
Response_reg:347:4.78e-27:453:108:1113 HD#3
520-640 aa · 121 aa · 17.5% of protein
Raw token
HD:520:0.0000000000018:640:125:110- Raw architecture: GGDEF:177:2.35e-32:321:156:160#Response_reg:347:4.78e-27:453:108:111#HD:520:0.0000000000018:640:125:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287355::NZ_JACOPE010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span486272-490609Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S40_02160RefSeq proteinWP_243238165.1
Context group ID
GCF_014287355::NZ_JACOPE010000001.1::G00007Context members
H8S40_RS02155H8S40_RS02160
Partner locus tags
H8S40_RS02155H8S40_RS02160
Partner old locus tags
H8S40_02155H8S40_02160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243238165.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S40_RS02160Primary locus identifier stored in the genes table.
Old locus tagH8S40_02160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPE010000001.1Sequence record reported by the local genomic context database.
Genomic interval488 531-490 609 nt2 079 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span486 272-490 609 ntGCF_014287355::NZ_JACOPE010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287355::NZ_JACOPE010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span486 272-490 609 nt4 338 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
486 272 nt490 609 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S40_RS02155GCF_014287355#H8S40_RS02155
HKHybrid
486 272-488 500 nt · Forward (+)
H8S40_RS02160GCF_014287355#H8S40_RS02160
RRRpfGCurrent focus
488 531-490 609 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287355#H8S40_RS02160The current gene is the representative for this cluster.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0031280
Simplified PFAM architecture for RROC_0031280
PFAM domain coverage: 406 / 692 aa (58.7%)
1 aa692 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[177-321] | Response_reg[347-456] | HD_5[511-661]
- Domain count: 3
- Matched identifier: RROC_0031280
- Positioned domains: GGDEF 177-321 ; Response_reg 347-456 ; HD_5 511-661
Cluster members and taxonomy
Representative gene: GCF_014287355#H8S40_RS02160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 065 · GCF_014287355
AssemblyASM1428735v1 · Contigreference genome · haploid
Genome composition3 454 944 bp · 38,5% GCRuminococcus hominis
Signal transduction countsGenes 74 · HK 40 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key