1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:8.2e-38:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S40_RS00975
Response regulator OmpR family
Ruminococcus hominis · GCF_014287355
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287355#H8S40_RS00975Stable P2CS identifier used across views.
GenomeGCF_014287355Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:154:2.89e-26:229:76:77- Raw architecture: Response_reg:6:8.2e-38:115:111:111#Trans_reg_C:154:2.89e-26:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287355::NZ_JACOPE010000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span227364-230757Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S40_00975RefSeq proteinWP_118724458.1
Context group ID
GCF_014287355::NZ_JACOPE010000001.1::G00003Context members
H8S40_RS00970H8S40_RS00975
Partner locus tags
H8S40_RS00970H8S40_RS00975
Partner old locus tags
H8S40_00970H8S40_00975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118724458.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7G5X3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7G5X3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S40_RS00975Primary locus identifier stored in the genes table.
Old locus tagH8S40_00975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPE010000001.1Sequence record reported by the local genomic context database.
Genomic interval230 056-230 757 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span227 364-230 757 ntGCF_014287355::NZ_JACOPE010000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287355::NZ_JACOPE010000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span227 364-230 757 nt3 394 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
227 364 nt230 757 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S40_RS00970GCF_014287355#H8S40_RS00970
HKClassic
227 364-230 063 nt · Forward (+)
H8S40_RS00975GCF_014287355#H8S40_RS00975
RROmpRCurrent focus
230 056-230 757 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287355#H8S40_RS00975The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1096213
Simplified PFAM architecture for RROC_1096213
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_1096213
- Positioned domains: Response_reg 6-114 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_014287355#H8S40_RS00975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 065 · GCF_014287355
AssemblyASM1428735v1 · Contigreference genome · haploid
Genome composition3 454 944 bp · 38,5% GCRuminococcus hominis
Signal transduction countsGenes 74 · HK 40 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key