1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:2.4e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S40_RS00920
Response regulator OmpR family
Ruminococcus hominis · GCF_014287355
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_014287355#H8S40_RS00920Stable P2CS identifier used across views.
GenomeGCF_014287355Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-221 aa · 75 aa · 32.8% of protein
Raw token
Trans_reg_C:147:8.78e-30:221:75:77- Raw architecture: Response_reg:4:2.4e-28:113:111:111#Trans_reg_C:147:8.78e-30:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_014287355::NZ_JACOPE010000001.1::G00002
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span213938-218195Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S40_00920RefSeq proteinWP_186864322.1
Context group ID
GCF_014287355::NZ_JACOPE010000001.1::G00002Context members
H8S40_RS00910H8S40_RS00915H8S40_RS00920H8S40_RS00925
Partner locus tags
H8S40_RS00910H8S40_RS00915H8S40_RS00920H8S40_RS00925
Partner old locus tags
H8S40_00910H8S40_00915H8S40_00920H8S40_00925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_186864322.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7G5U5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7G5U5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S40_RS00920Primary locus identifier stored in the genes table.
Old locus tagH8S40_00920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPE010000001.1Sequence record reported by the local genomic context database.
Genomic interval216 265-216 954 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span213 938-218 195 ntGCF_014287355::NZ_JACOPE010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287355::NZ_JACOPE010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span213 938-218 195 nt4 258 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 938 nt218 195 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
H8S40_RS00910GCF_014287355#H8S40_RS00910
RROmpR
213 938-214 597 nt · Forward (+)
H8S40_RS00915GCF_014287355#H8S40_RS00915
HKClassic
214 588-215 952 nt · Forward (+)
H8S40_RS00920GCF_014287355#H8S40_RS00920
RROmpRCurrent focus
216 265-216 954 nt · Forward (+)
H8S40_RS00925GCF_014287355#H8S40_RS00925
HKClassic
216 930-218 195 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287355#H8S40_RS00920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1269385
Simplified PFAM architecture for RROC_1269385
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[147-222]
- Domain count: 2
- Matched identifier: RROC_1269385
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 147-222
Cluster members and taxonomy
Representative gene: GCF_014287355#H8S40_RS00920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 065 · GCF_014287355
AssemblyASM1428735v1 · Contigreference genome · haploid
Genome composition3 454 944 bp · 38,5% GCRuminococcus hominis
Signal transduction countsGenes 74 · HK 40 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key