1 HAMP#1
171-240 aa · 70 aa · 15.0% of protein
Raw token
HAMP:171:0.000000000183:240:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S40_RS00765
Histidine kinase, Classic
Ruminococcus hominis · GCF_014287355
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287355#H8S40_RS00765Stable P2CS identifier used across views.
GenomeGCF_014287355Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 467 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-304 aa · 60 aa · 12.8% of protein
Raw token
HisKA:245:0.0000000000000316:304:60:643 HATPase_c#3
356-464 aa · 109 aa · 23.3% of protein
Raw token
HATPase_c:356:2.46e-31:464:109:109- Raw architecture: HAMP:171:0.000000000183:240:70:69#HisKA:245:0.0000000000000316:304:60:64#HATPase_c:356:2.46e-31:464:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287355::NZ_JACOPE010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184218-186396Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S40_00765RefSeq proteinWP_117990736.1
Context group ID
GCF_014287355::NZ_JACOPE010000001.1::G00001Context members
H8S40_RS00765H8S40_RS00770
Partner locus tags
H8S40_RS00765H8S40_RS00770
Partner old locus tags
H8S40_00765H8S40_00770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117990736.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7G3W2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7G3W2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S40_RS00765Primary locus identifier stored in the genes table.
Old locus tagH8S40_00765Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPE010000001.1Sequence record reported by the local genomic context database.
Genomic interval184 218-185 621 nt1 404 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 218-186 396 ntGCF_014287355::NZ_JACOPE010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287355::NZ_JACOPE010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span184 218-186 396 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 218 nt186 396 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S40_RS00765GCF_014287355#H8S40_RS00765
HKClassicCurrent focus
184 218-185 621 nt · Reverse (-)
H8S40_RS00770GCF_014287355#H8S40_RS00770
RROmpR
185 695-186 396 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014287355#H8S40_RS00765The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1753361
Simplified PFAM architecture for HKOC_1753361
PFAM domain coverage: 217 / 467 aa (46.5%)
1 aa467 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[193-239] | HisKA[246-307] | HATPase_c[357-464]
- Domain count: 3
- Matched identifier: HKOC_1753361
- Positioned domains: HAMP 193-239 ; HisKA 246-307 ; HATPase_c 357-464
Cluster members and taxonomy
Representative gene: GCF_014287355#H8S40_RS00765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 065 · GCF_014287355
AssemblyASM1428735v1 · Contigreference genome · haploid
Genome composition3 454 944 bp · 38,5% GCRuminococcus hominis
Signal transduction countsGenes 74 · HK 40 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key