1 Response_reg#1
7-116 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:7:1.1e-36:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8S40_RS00770
Response regulator OmpR family
Ruminococcus hominis · GCF_014287355
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014287355#H8S40_RS00770Stable P2CS identifier used across views.
GenomeGCF_014287355Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-230 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:156:4.72e-33:230:77:77- Raw architecture: Response_reg:7:1.1e-36:116:111:111#Trans_reg_C:156:4.72e-33:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014287355::NZ_JACOPE010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span184218-186396Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8S40_00770RefSeq proteinWP_022074935.1
Context group ID
GCF_014287355::NZ_JACOPE010000001.1::G00001Context members
H8S40_RS00765H8S40_RS00770
Partner locus tags
H8S40_RS00765H8S40_RS00770
Partner old locus tags
H8S40_00765H8S40_00770
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022074935.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7G3W4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7G3W4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8S40_RS00770Primary locus identifier stored in the genes table.
Old locus tagH8S40_00770Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOPE010000001.1Sequence record reported by the local genomic context database.
Genomic interval185 695-186 396 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span184 218-186 396 ntGCF_014287355::NZ_JACOPE010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014287355::NZ_JACOPE010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOPE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span184 218-186 396 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
184 218 nt186 396 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8S40_RS00765GCF_014287355#H8S40_RS00765
HKClassic
184 218-185 621 nt · Reverse (-)
H8S40_RS00770GCF_014287355#H8S40_RS00770
RROmpRCurrent focus
185 695-186 396 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS13175Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1090850
Simplified PFAM architecture for RROC_1090850
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[156-230]
- Domain count: 2
- Matched identifier: RROC_1090850
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 156-230 ; Trans_reg_C 156-230
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS13175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 763 065 · GCF_014287355
AssemblyASM1428735v1 · Contigreference genome · haploid
Genome composition3 454 944 bp · 38,5% GCRuminococcus hominis
Signal transduction countsGenes 74 · HK 40 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key