1 Response_reg#1
38-112 aa · 75 aa · 60.5% of protein
Raw token
Response_reg:38:0.0000000331:112:80:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B17_RS07960
Response regulator, CheY family
Blautia faecis · GCF_013302345
ClassRRTypeCheYLength124 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302345#G5B17_RS07960Stable P2CS identifier used across views.
GenomeGCF_013302345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length124 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage75 / 124 aa (60.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa124 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:38:0.0000000331:112:80:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302345::NZ_JAAITS010000018.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34158-34532Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B17_07965RefSeq proteinWP_173769668.1
Context group ID
GCF_013302345::NZ_JAAITS010000018.1::G00016Context members
G5B17_RS07960
Partner locus tags
G5B17_RS07960
Partner old locus tags
G5B17_07965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173769668.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H5H3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H5H3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B17_RS07960Primary locus identifier stored in the genes table.
Old locus tagG5B17_07965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITS010000018.1Sequence record reported by the local genomic context database.
Genomic interval34 158-34 532 nt375 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 158-34 532 ntGCF_013302345::NZ_JAAITS010000018.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302345::NZ_JAAITS010000018.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITS010000018.1All displayed genes belong to this local TCS context.
Neighborhood span34 158-34 532 nt375 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 158 nt34 532 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5B17_RS07960GCF_013302345#G5B17_RS07960
RRCheYCurrent focus
34 158-34 532 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS07960The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2385349
Simplified PFAM architecture for RROC_2385349
PFAM domain coverage: 96 / 124 aa (77.4%)
1 aa124 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[17-112]
- Domain count: 1
- Matched identifier: RROC_2385349
- Positioned domains: Response_reg 17-112
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS07960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302345
AssemblyASM1330234v1 · Contighaploid
Genome composition4 581 730 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 146 · HK 74 · RR 71CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key