1 HAMP#1
304-372 aa · 69 aa · 12.0% of protein
Raw token
HAMP:304:0.000000000361:372:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B17_RS04215
Histidine kinase, Classic
Blautia faecis · GCF_013302345
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302345#G5B17_RS04215Stable P2CS identifier used across views.
GenomeGCF_013302345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 577 aa (41.9%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation3 items
2 His_kinase#2
387-466 aa · 80 aa · 13.9% of protein
Raw token
His_kinase:387:9.85e-28:466:80:803 HATPase_c#3
485-577 aa · 93 aa · 16.1% of protein
Raw token
HATPase_c:485:0.00000000961:577:108:109- Raw architecture: HAMP:304:0.000000000361:372:69:69#His_kinase:387:9.85e-28:466:80:80#HATPase_c:485:0.00000000961:577:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302345::NZ_JAAITS010000008.1::G00088
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51506-54344Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B17_04225RefSeq proteinWP_173769399.1
Context group ID
GCF_013302345::NZ_JAAITS010000008.1::G00088Context members
G5B17_RS04215G5B17_RS04220
Partner locus tags
G5B17_RS04215G5B17_RS04220
Partner old locus tags
G5B17_04225G5B17_04230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173769399.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H5J3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H5J3_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B17_RS04215Primary locus identifier stored in the genes table.
Old locus tagG5B17_04225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITS010000008.1Sequence record reported by the local genomic context database.
Genomic interval51 506-53 239 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 506-54 344 ntGCF_013302345::NZ_JAAITS010000008.1::G00088
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302345::NZ_JAAITS010000008.1::G00088Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITS010000008.1All displayed genes belong to this local TCS context.
Neighborhood span51 506-54 344 nt2 839 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 506 nt54 344 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B17_RS04215GCF_013302345#G5B17_RS04215
HKClassicCurrent focus
51 506-53 239 nt · Forward (+)
G5B17_RS04220GCF_013302345#G5B17_RS04220
RRunclassified
53 274-54 344 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS04215The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1179254
Simplified PFAM architecture for HKOC_1179254
PFAM domain coverage: 175 / 577 aa (30.3%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[387-466] | HATPase_c[482-576]
- Domain count: 2
- Matched identifier: HKOC_1179254
- Positioned domains: His_kinase 387-466 ; HATPase_c 482-576
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS04215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302345
AssemblyASM1330234v1 · Contighaploid
Genome composition4 581 730 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 146 · HK 74 · RR 71CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key