1 HisKA_3#1
172-236 aa · 65 aa · 18.2% of protein
Raw token
HisKA_3:172:1.03e-16:236:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B17_RS04025
Histidine kinase, Classic
Blautia faecis · GCF_013302345
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302345#G5B17_RS04025Stable P2CS identifier used across views.
GenomeGCF_013302345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 358 aa (40.5%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
276-355 aa · 80 aa · 22.3% of protein
Raw token
HATPase_c:276:0.000000000173:355:98:109- Raw architecture: HisKA_3:172:1.03e-16:236:67:68#HATPase_c:276:0.000000000173:355:98:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302345::NZ_JAAITS010000007.1::G00082
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span98369-100163Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B17_04030RefSeq proteinWP_173769379.1
Context group ID
GCF_013302345::NZ_JAAITS010000007.1::G00082Context members
G5B17_RS04020G5B17_RS04025
Partner locus tags
G5B17_RS04020G5B17_RS04025
Partner old locus tags
G5B17_04025G5B17_04030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173769379.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B17_RS04025Primary locus identifier stored in the genes table.
Old locus tagG5B17_04030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITS010000007.1Sequence record reported by the local genomic context database.
Genomic interval99 087-100 163 nt1 077 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span98 369-100 163 ntGCF_013302345::NZ_JAAITS010000007.1::G00082
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302345::NZ_JAAITS010000007.1::G00082Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITS010000007.1All displayed genes belong to this local TCS context.
Neighborhood span98 369-100 163 nt1 795 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 369 nt100 163 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B17_RS04020GCF_013302345#G5B17_RS04020
RRNarL
98 369-98 989 nt · Reverse (-)
G5B17_RS04025GCF_013302345#G5B17_RS04025
HKClassicCurrent focus
99 087-100 163 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302345#G5B17_RS04025The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2761223
Simplified PFAM architecture for HKOC_2761223
PFAM domain coverage: 64 / 358 aa (17.9%)
1 aa358 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[172-235]
- Domain count: 1
- Matched identifier: HKOC_2761223
- Positioned domains: HisKA_3 172-235
Cluster members and taxonomy
Representative gene: GCF_013302345#G5B17_RS04025
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302345
AssemblyASM1330234v1 · Contighaploid
Genome composition4 581 730 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 146 · HK 74 · RR 71CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key