1 HisKA#1
204-267 aa · 64 aa · 15.1% of protein
Raw token
HisKA:204:0.0000000000000128:267:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4972_RS00675
Histidine kinase, Classic
Blautia wexlerae · GCF_013301985
ClassHKTypeClassicLength425 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301985#G4972_RS00675Stable P2CS identifier used across views.
GenomeGCF_013301985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length425 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 425 aa (40.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa425 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-425 aa · 110 aa · 25.9% of protein
Raw token
HATPase_c:316:6.54e-28:425:110:109- Raw architecture: HisKA:204:0.0000000000000128:267:64:64#HATPase_c:316:6.54e-28:425:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301985::NZ_JAAIPG010000001.1::G00020
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span142861-144138Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4972_00670RefSeq proteinWP_173744574.1
Context group ID
GCF_013301985::NZ_JAAIPG010000001.1::G00020Context members
G4972_RS00675
Partner locus tags
G4972_RS00675
Partner old locus tags
G4972_00670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173744574.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4972_RS00675Primary locus identifier stored in the genes table.
Old locus tagG4972_00670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPG010000001.1Sequence record reported by the local genomic context database.
Genomic interval142 861-144 138 nt1 278 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span142 861-144 138 ntGCF_013301985::NZ_JAAIPG010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301985::NZ_JAAIPG010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span142 861-144 138 nt1 278 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 861 nt144 138 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4972_RS00675GCF_013301985#G4972_RS00675
HKClassicCurrent focus
142 861-144 138 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301985#G4972_RS00675The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2218697
Simplified PFAM architecture for HKOC_2218697
PFAM domain coverage: 172 / 425 aa (40.5%)
1 aa425 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[205-267] | HATPase_c[316-424]
- Domain count: 2
- Matched identifier: HKOC_2218697
- Positioned domains: HisKA 205-267 ; HATPase_c 316-424
Cluster members and taxonomy
Representative gene: GCF_013301985#G4972_RS00675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301985
AssemblyASM1330198v1 · Contighaploid
Genome composition3 928 590 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 59 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key