1 Response_reg#1
3-113 aa · 111 aa · 49.8% of protein
Raw token
Response_reg:3:5.41e-37:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4972_RS00670
Response regulator OmpR family
Blautia wexlerae · GCF_013301985
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301985#G4972_RS00670Stable P2CS identifier used across views.
GenomeGCF_013301985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-221 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:146:4.33e-23:221:77:77- Raw architecture: Response_reg:3:5.41e-37:113:111:111#Trans_reg_C:146:4.33e-23:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301985::NZ_JAAIPG010000001.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span142046-142717Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4972_00665RefSeq proteinWP_118341571.1
Context group ID
GCF_013301985::NZ_JAAIPG010000001.1::G00019Context members
G4972_RS00670
Partner locus tags
G4972_RS00670
Partner old locus tags
G4972_00665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118341571.1Primary protein accession used for annex mappings.
UniProt accessionA0A564WUP0Primary UniProt accession resolved in the annex database.
UniProt IDA0A564WUP0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4972_RS00670Primary locus identifier stored in the genes table.
Old locus tagG4972_00665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPG010000001.1Sequence record reported by the local genomic context database.
Genomic interval142 046-142 717 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span142 046-142 717 ntGCF_013301985::NZ_JAAIPG010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301985::NZ_JAAIPG010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span142 046-142 717 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 046 nt142 717 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4972_RS00670GCF_013301985#G4972_RS00670
RROmpRCurrent focus
142 046-142 717 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009881235#GT685_RS05800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1604952
Simplified PFAM architecture for RROC_1604952
PFAM domain coverage: 187 / 223 aa (83.9%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1604952
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_009881235#GT685_RS05800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301985
AssemblyASM1330198v1 · Contighaploid
Genome composition3 928 590 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 59 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key