1 Response_reg#1
4-115 aa · 112 aa · 28.6% of protein
Raw token
Response_reg:4:3.99e-29:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4972_RS00955
Response regulator, unclassified
Blautia wexlerae · GCF_013301985
ClassRRTypeunclassifiedLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301985#G4972_RS00955Stable P2CS identifier used across views.
GenomeGCF_013301985Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage187 / 392 aa (47.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
297-338 aa · 42 aa · 10.7% of protein
Raw token
HTH_AraC:297:0.000000000875:338:42:423 HTH_AraC#3
354-386 aa · 33 aa · 8.4% of protein
Raw token
HTH_AraC:354:0.00000041:386:33:42- Raw architecture: Response_reg:4:3.99e-29:115:112:111#HTH_AraC:297:0.000000000875:338:42:42#HTH_AraC:354:0.00000041:386:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301985::NZ_JAAIPG010000001.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span196495-199490Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4972_00955RefSeq proteinWP_008706712.1
Context group ID
GCF_013301985::NZ_JAAIPG010000001.1::G00021Context members
G4972_RS00950G4972_RS00955
Partner locus tags
G4972_RS00950G4972_RS00955
Partner old locus tags
G4972_00950G4972_00955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008706712.1Primary protein accession used for annex mappings.
UniProt accessionA0A174EHS7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174EHS7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4972_RS00955Primary locus identifier stored in the genes table.
Old locus tagG4972_00955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPG010000001.1Sequence record reported by the local genomic context database.
Genomic interval198 312-199 490 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span196 495-199 490 ntGCF_013301985::NZ_JAAIPG010000001.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301985::NZ_JAAIPG010000001.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPG010000001.1All displayed genes belong to this local TCS context.
Neighborhood span196 495-199 490 nt2 996 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
196 495 nt199 490 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4972_RS00950GCF_013301985#G4972_RS00950
HKClassic
196 495-198 279 nt · Forward (+)
G4972_RS00955GCF_013301985#G4972_RS00955
RRunclassifiedCurrent focus
198 312-199 490 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS07715Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0402356
Simplified PFAM architecture for RROC_0402356
PFAM domain coverage: 189 / 392 aa (48.2%)
1 aa392 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[4-115] | HTH_AraC[297-338] | HTH_AraC[352-386]
- Domain count: 3
- Matched identifier: RROC_0402356
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_AraC 297-338 ; HTH_AraC 297-338 ; HTH_AraC 352-386 ; HTH_AraC 352-386
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS07715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301985
AssemblyASM1330198v1 · Contighaploid
Genome composition3 928 590 bp · 41,5% GCBlautia wexlerae
Signal transduction countsGenes 124 · HK 59 · RR 63CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key