1 Response_reg#1
4-112 aa · 109 aa · 49.8% of protein
Raw token
Response_reg:4:8.08e-31:112:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS16635
Response regulator OmpR family
Blautia wexlerae · GCF_013301775
ClassRRTypeOmpRLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS16635Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 219 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-218 aa · 75 aa · 34.2% of protein
Raw token
Trans_reg_C:144:3.2e-25:218:77:77- Raw architecture: Response_reg:4:8.08e-31:112:112:111#Trans_reg_C:144:3.2e-25:218:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000080.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3222-5236Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_16680RefSeq proteinWP_117982508.1
Context group ID
GCF_013301775::NZ_JAAIOX010000080.1::G00065Context members
G4476_RS16630G4476_RS16635
Partner locus tags
G4476_RS16630G4476_RS16635
Partner old locus tags
G4476_16675G4476_16680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117982508.1Primary protein accession used for annex mappings.
UniProt accessionA0A374NP34Primary UniProt accession resolved in the annex database.
UniProt IDA0A374NP34_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS16635Primary locus identifier stored in the genes table.
Old locus tagG4476_16680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000080.1Sequence record reported by the local genomic context database.
Genomic interval4 577-5 236 nt660 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 222-5 236 ntGCF_013301775::NZ_JAAIOX010000080.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000080.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000080.1All displayed genes belong to this local TCS context.
Neighborhood span3 222-5 236 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 222 nt5 236 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS16630GCF_013301775#G4476_RS16630
HKClassic
3 222-4 586 nt · Reverse (-)
G4476_RS16635GCF_013301775#G4476_RS16635
RROmpRCurrent focus
4 577-5 236 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003466185#DXD91_RS07320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1777287
Simplified PFAM architecture for RROC_1777287
PFAM domain coverage: 182 / 219 aa (83.1%)
1 aa219 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-217]
- Domain count: 2
- Matched identifier: RROC_1777287
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-217 ; Trans_reg_C 145-217
Cluster members and taxonomy
Representative gene: GCF_003466185#DXD91_RS07320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key