1 Response_reg#1
4-114 aa · 111 aa · 20.9% of protein
Raw token
Response_reg:4:2.9e-26:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS01080
Response regulator, unclassified
Blautia wexlerae · GCF_013301775
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS01080Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 531 aa (35.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
437-478 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:437:0.00000000222:478:42:423 HTH_AraC#3
491-527 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:491:0.0000000000398:527:37:42- Raw architecture: Response_reg:4:2.9e-26:114:111:111#HTH_AraC:437:0.00000000222:478:42:42#HTH_AraC:491:0.0000000000398:527:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88444-91547Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_01090RefSeq proteinWP_055052672.1
Context group ID
GCF_013301775::NZ_JAAIOX010000002.1::G00025Context members
G4476_RS01075G4476_RS01080
Partner locus tags
G4476_RS01075G4476_RS01080
Partner old locus tags
G4476_01085G4476_01090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055052672.1Primary protein accession used for annex mappings.
UniProt accessionA0A173XM30Primary UniProt accession resolved in the annex database.
UniProt IDA0A173XM30_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS01080Primary locus identifier stored in the genes table.
Old locus tagG4476_01090Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000002.1Sequence record reported by the local genomic context database.
Genomic interval89 952-91 547 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 444-91 547 ntGCF_013301775::NZ_JAAIOX010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000002.1All displayed genes belong to this local TCS context.
Neighborhood span88 444-91 547 nt3 104 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 444 nt91 547 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS01075GCF_013301775#G4476_RS01075
HKClassic
88 444-89 925 nt · Forward (+)
G4476_RS01080GCF_013301775#G4476_RS01080
RRunclassifiedCurrent focus
89 952-91 547 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404455#ARA27_RS02885Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0109767
Simplified PFAM architecture for RROC_0109767
PFAM domain coverage: 281 / 531 aa (52.9%)
1 aa531 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-114] | GGDEF_2[205-295] | HTH_18[451-529]
- Domain count: 3
- Matched identifier: RROC_0109767
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; GGDEF_2 205-295 ; GGDEF_2 205-295 ; HTH_18 451-529 ; HTH_18 451-529
Cluster members and taxonomy
Representative gene: GCF_001404455#ARA27_RS02885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key