1 Response_reg#1
4-119 aa · 116 aa · 48.9% of protein
Raw token
Response_reg:4:4.81e-16:119:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS00155
Response regulator LytTR family
Blautia wexlerae · GCF_013301775
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301775#G4476_RS00155Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage210 / 237 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-230 aa · 94 aa · 39.7% of protein
Raw token
LytTR:137:1.33e-17:230:99:98- Raw architecture: Response_reg:4:4.81e-16:119:118:111#LytTR:137:1.33e-17:230:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301775::NZ_JAAIOX010000001.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28859-29572Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_00160RefSeq proteinWP_118520087.1
Context group ID
GCF_013301775::NZ_JAAIOX010000001.1::G00014Context members
G4476_RS00155
Partner locus tags
G4476_RS00155
Partner old locus tags
G4476_00160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118520087.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS00155Primary locus identifier stored in the genes table.
Old locus tagG4476_00160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000001.1Sequence record reported by the local genomic context database.
Genomic interval28 859-29 572 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 859-29 572 ntGCF_013301775::NZ_JAAIOX010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000001.1All displayed genes belong to this local TCS context.
Neighborhood span28 859-29 572 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 859 nt29 572 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4476_RS00155GCF_013301775#G4476_RS00155
RRLytTRCurrent focus
28 859-29 572 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301625#G4538_RS01800Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0971863
Simplified PFAM architecture for RROC_0971863
PFAM domain coverage: 208 / 237 aa (87.8%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-119] | LytTR[138-229]
- Domain count: 2
- Matched identifier: RROC_0971863
- Positioned domains: Response_reg 4-119 ; LytTR 138-229
Cluster members and taxonomy
Representative gene: GCF_013301625#G4538_RS01800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key