1 HisKA#1
235-295 aa · 61 aa · 13.4% of protein
Raw token
HisKA:235:0.00000000000034:295:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS16630
Histidine kinase, Classic
Blautia wexlerae · GCF_013301775
ClassHKTypeClassicLength454 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS16630Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length454 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 454 aa (37.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa454 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
344-453 aa · 110 aa · 24.2% of protein
Raw token
HATPase_c:344:7.43e-22:453:110:109- Raw architecture: HisKA:235:0.00000000000034:295:61:64#HATPase_c:344:7.43e-22:453:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000080.1::G00065
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3222-5236Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_16675RefSeq proteinWP_118611368.1
Context group ID
GCF_013301775::NZ_JAAIOX010000080.1::G00065Context members
G4476_RS16630G4476_RS16635
Partner locus tags
G4476_RS16630G4476_RS16635
Partner old locus tags
G4476_16675G4476_16680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118611368.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2GPD7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2GPD7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS16630Primary locus identifier stored in the genes table.
Old locus tagG4476_16675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000080.1Sequence record reported by the local genomic context database.
Genomic interval3 222-4 586 nt1 365 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 222-5 236 ntGCF_013301775::NZ_JAAIOX010000080.1::G00065
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000080.1::G00065Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000080.1All displayed genes belong to this local TCS context.
Neighborhood span3 222-5 236 nt2 015 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 222 nt5 236 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS16630GCF_013301775#G4476_RS16630
HKClassicCurrent focus
3 222-4 586 nt · Reverse (-)
G4476_RS16635GCF_013301775#G4476_RS16635
RROmpR
4 577-5 236 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS16670Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1916743
Simplified PFAM architecture for HKOC_1916743
PFAM domain coverage: 171 / 454 aa (37.7%)
1 aa454 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[235-296] | HATPase_c[345-453]
- Domain count: 2
- Matched identifier: HKOC_1916743
- Positioned domains: HisKA 235-296 ; HATPase_c 345-453
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS16670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key