1 PBPb#1
45-262 aa · 218 aa · 22.9% of protein
Raw token
PBPb:45:1.37e-31:262:229:219P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS11665
Histidine kinase, Hybrid
Blautia wexlerae · GCF_013301775
ClassHKTypeHybridLength954 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301775#G4476_RS11665Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PBPbHisKAHATPase_cResponse_reg
Protein length954 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage724 / 954 aa (75.9%)Merged over positioned domains only.
Domain description2 PBPb,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa954 aa
Domain-by-domain annotation5 items
2 PBPb#2
284-488 aa · 205 aa · 21.5% of protein
Raw token
PBPb:284:0.00000000000000134:488:215:2193 HisKA#3
573-638 aa · 66 aa · 6.9% of protein
Raw token
HisKA:573:1.76e-18:638:66:644 HATPase_c#4
685-802 aa · 118 aa · 12.4% of protein
Raw token
HATPase_c:685:5.07e-32:802:118:1095 Response_reg#5
828-944 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:828:1.04e-28:944:117:111- Raw architecture: PBPb:45:1.37e-31:262:229:219#PBPb:284:0.00000000000000134:488:215:219#HisKA:573:1.76e-18:638:66:64#HATPase_c:685:5.07e-32:802:118:109#Response_reg:828:1.04e-28:944:117:111
- Domain description: 2 PBPb,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301775::NZ_JAAIOX010000036.1::G00035
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span233-3097Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_11660RefSeq proteinWP_226824760.1
Context group ID
GCF_013301775::NZ_JAAIOX010000036.1::G00035Context members
G4476_RS11665
Partner locus tags
G4476_RS11665
Partner old locus tags
G4476_11660
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226824760.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS11665Primary locus identifier stored in the genes table.
Old locus tagG4476_11660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000036.1Sequence record reported by the local genomic context database.
Genomic interval233-3 097 nt2 865 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span233-3 097 ntGCF_013301775::NZ_JAAIOX010000036.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000036.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000036.1All displayed genes belong to this local TCS context.
Neighborhood span233-3 097 nt2 865 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
233 nt3 097 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4476_RS11665GCF_013301775#G4476_RS11665
HKHybridCurrent focus
233-3 097 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS11735Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0323055
Simplified PFAM architecture for HKOC_0323055
PFAM domain coverage: 507 / 954 aa (53.1%)
1 aa954 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[54-262] | HisKA[573-638] | HATPase_c[685-800] | Response_reg[828-943]
- Domain count: 4
- Matched identifier: HKOC_0323055
- Positioned domains: SBP_bac_3 54-262 ; HisKA 573-638 ; HATPase_c 685-800 ; Response_reg 828-943
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS11735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key