1 Response_reg#1
8-120 aa · 113 aa · 20.7% of protein
Raw token
Response_reg:8:3.49e-26:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS11545
Response regulator, unclassified
Blautia wexlerae · GCF_013301775
ClassRRTypeunclassifiedLength547 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS11545Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length547 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 547 aa (35.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa547 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
451-492 aa · 42 aa · 7.7% of protein
Raw token
HTH_AraC:451:0.000000000406:492:42:423 HTH_AraC#3
505-542 aa · 38 aa · 6.9% of protein
Raw token
HTH_AraC:505:0.0000000225:542:38:42- Raw architecture: Response_reg:8:3.49e-26:120:114:111#HTH_AraC:451:0.000000000406:492:42:42#HTH_AraC:505:0.0000000225:542:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000035.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6876-10497Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_11540RefSeq proteinWP_118568931.1
Context group ID
GCF_013301775::NZ_JAAIOX010000035.1::G00033Context members
G4476_RS11545G4476_RS11550
Partner locus tags
G4476_RS11545G4476_RS11550
Partner old locus tags
G4476_11540G4476_11545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118568931.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS11545Primary locus identifier stored in the genes table.
Old locus tagG4476_11540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000035.1Sequence record reported by the local genomic context database.
Genomic interval6 876-8 519 nt1 644 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 876-10 497 ntGCF_013301775::NZ_JAAIOX010000035.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000035.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000035.1All displayed genes belong to this local TCS context.
Neighborhood span6 876-10 497 nt3 622 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 876 nt10 497 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS11545GCF_013301775#G4476_RS11545
RRunclassifiedCurrent focus
6 876-8 519 nt · Reverse (-)
G4476_RS11550GCF_013301775#G4476_RS11550
HKClassic
8 692-10 497 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS11615Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_AraC + HTH_AraC3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0078567
Simplified PFAM architecture for RROC_0078567
PFAM domain coverage: 195 / 547 aa (35.6%)
1 aa547 aa
Response_regHTH_AraCHTH_AraC
- Simplified architecture: Response_reg + HTH_AraC + HTH_AraC
- Raw architecture: Response_reg[8-120] | HTH_AraC[451-492] | HTH_AraC[503-542]
- Domain count: 3
- Matched identifier: RROC_0078567
- Positioned domains: Response_reg 8-120 ; HTH_AraC 451-492 ; HTH_AraC 503-542
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS11615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key