1 His_kinase#1
371-448 aa · 78 aa · 13.5% of protein
Raw token
His_kinase:371:3.18e-28:448:78:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS09970
Histidine kinase, Classic
Blautia wexlerae · GCF_013301775
ClassHKTypeClassicLength577 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS09970Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length577 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 577 aa (32.4%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa577 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
467-575 aa · 109 aa · 18.9% of protein
Raw token
HATPase_c:467:0.00000000917:575:112:109- Raw architecture: His_kinase:371:3.18e-28:448:78:80#HATPase_c:467:0.00000000917:575:112:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000027.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18529-21897Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_09980RefSeq proteinWP_118575511.1
Context group ID
GCF_013301775::NZ_JAAIOX010000027.1::G00019Context members
G4476_RS09970G4476_RS09975
Partner locus tags
G4476_RS09970G4476_RS09975
Partner old locus tags
G4476_09980G4476_09985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118575511.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS09970Primary locus identifier stored in the genes table.
Old locus tagG4476_09980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000027.1Sequence record reported by the local genomic context database.
Genomic interval18 529-20 262 nt1 734 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 529-21 897 ntGCF_013301775::NZ_JAAIOX010000027.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000027.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000027.1All displayed genes belong to this local TCS context.
Neighborhood span18 529-21 897 nt3 369 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 529 nt21 897 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS09970GCF_013301775#G4476_RS09970
HKClassicCurrent focus
18 529-20 262 nt · Forward (+)
G4476_RS09975GCF_013301775#G4476_RS09975
RRunclassified
20 299-21 897 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS09745Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1179247
Simplified PFAM architecture for HKOC_1179247
PFAM domain coverage: 188 / 577 aa (32.6%)
1 aa577 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[371-448] | HATPase_c[467-576]
- Domain count: 2
- Matched identifier: HKOC_1179247
- Positioned domains: His_kinase 371-448 ; HATPase_c 467-576
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS09745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key