1 Response_reg#1
6-116 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:6:7.53e-33:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS09280
Response regulator OmpR family
Blautia wexlerae · GCF_013301775
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS09280Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:149:4.74e-32:222:77:77- Raw architecture: Response_reg:6:7.53e-33:116:112:111#Trans_reg_C:149:4.74e-32:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000024.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26246-28467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_09295RefSeq proteinWP_020993968.1
Context group ID
GCF_013301775::NZ_JAAIOX010000024.1::G00017Context members
G4476_RS09275G4476_RS09280
Partner locus tags
G4476_RS09275G4476_RS09280
Partner old locus tags
G4476_09290G4476_09295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020993968.1Primary protein accession used for annex mappings.
UniProt accessionA0A174NZ16Primary UniProt accession resolved in the annex database.
UniProt IDA0A174NZ16_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS09280Primary locus identifier stored in the genes table.
Old locus tagG4476_09295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000024.1Sequence record reported by the local genomic context database.
Genomic interval27 787-28 467 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 246-28 467 ntGCF_013301775::NZ_JAAIOX010000024.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000024.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000024.1All displayed genes belong to this local TCS context.
Neighborhood span26 246-28 467 nt2 222 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 246 nt28 467 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS09275GCF_013301775#G4476_RS09275
HKClassic
26 246-27 790 nt · Reverse (-)
G4476_RS09280GCF_013301775#G4476_RS09280
RROmpRCurrent focus
27 787-28 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424085#G599_RS0115190Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410740
Simplified PFAM architecture for RROC_1410740
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1410740
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000424085#G599_RS0115190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key