1 Response_reg#1
5-113 aa · 109 aa · 47.6% of protein
Raw token
Response_reg:5:4.68e-31:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS03810
Response regulator OmpR family
Blautia wexlerae · GCF_013301775
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS03810Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 229 aa (80.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:150:1.94e-29:225:77:77- Raw architecture: Response_reg:5:4.68e-31:113:110:111#Trans_reg_C:150:1.94e-29:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000007.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91779-93391Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_03820RefSeq proteinWP_025580962.1
Context group ID
GCF_013301775::NZ_JAAIOX010000007.1::G00064Context members
G4476_RS03810G4476_RS03815
Partner locus tags
G4476_RS03810G4476_RS03815
Partner old locus tags
G4476_03820G4476_03825
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025580962.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV1AG97Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV1AG97_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS03810Primary locus identifier stored in the genes table.
Old locus tagG4476_03820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000007.1Sequence record reported by the local genomic context database.
Genomic interval91 779-92 468 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 779-93 391 ntGCF_013301775::NZ_JAAIOX010000007.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000007.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000007.1All displayed genes belong to this local TCS context.
Neighborhood span91 779-93 391 nt1 613 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 779 nt93 391 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS03810GCF_013301775#G4476_RS03810
RROmpRCurrent focus
91 779-92 468 nt · Forward (+)
G4476_RS03815GCF_013301775#G4476_RS03815
HKClassic
92 474-93 391 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0119700Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1250027
Simplified PFAM architecture for RROC_1250027
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1250027
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0119700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key