1 dCache_1#1
38-268 aa · 231 aa · 38.6% of protein
Raw token
dCache_1:38:0.00000000000000582:268:235:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS02850
Histidine kinase, Classic
Blautia wexlerae · GCF_013301775
ClassHKTypeClassicLength599 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS02850Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length599 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage487 / 599 aa (81.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa599 aa
Domain-by-domain annotation4 items
2 HAMP#2
285-354 aa · 70 aa · 11.7% of protein
Raw token
HAMP:285:0.0000000581:354:70:693 His_kinase#3
369-448 aa · 80 aa · 13.4% of protein
Raw token
His_kinase:369:4.69e-34:448:80:804 HATPase_c#4
464-569 aa · 106 aa · 17.7% of protein
Raw token
HATPase_c:464:0.000000000000178:569:109:109- Raw architecture: dCache_1:38:0.00000000000000582:268:235:195#HAMP:285:0.0000000581:354:70:69#His_kinase:369:4.69e-34:448:80:80#HATPase_c:464:0.000000000000178:569:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000006.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4990-8460Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_02865RefSeq proteinWP_173684403.1
Context group ID
GCF_013301775::NZ_JAAIOX010000006.1::G00053Context members
G4476_RS02845G4476_RS02850
Partner locus tags
G4476_RS02845G4476_RS02850
Partner old locus tags
G4476_02860G4476_02865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173684403.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS02850Primary locus identifier stored in the genes table.
Old locus tagG4476_02865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000006.1Sequence record reported by the local genomic context database.
Genomic interval6 661-8 460 nt1 800 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 990-8 460 ntGCF_013301775::NZ_JAAIOX010000006.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000006.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000006.1All displayed genes belong to this local TCS context.
Neighborhood span4 990-8 460 nt3 471 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 990 nt8 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS02845GCF_013301775#G4476_RS02845
RRunclassified
4 990-6 588 nt · Forward (+)
G4476_RS02850GCF_013301775#G4476_RS02850
HKClassicCurrent focus
6 661-8 460 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS09420Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1058948
Simplified PFAM architecture for HKOC_1058948
PFAM domain coverage: 416 / 599 aa (69.4%)
1 aa599 aa
dCache_1His_kinaseHATPase_c
- Simplified architecture: dCache_1 + His_kinase + HATPase_c
- Raw architecture: dCache_1[39-268] | His_kinase[369-448] | HATPase_c[465-570]
- Domain count: 3
- Matched identifier: HKOC_1058948
- Positioned domains: dCache_1 39-268 ; His_kinase 369-448 ; HATPase_c 465-570
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS09420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key