1 Response_reg#1
6-116 aa · 111 aa · 20.9% of protein
Raw token
Response_reg:6:6.93e-28:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4476_RS02845
Response regulator, unclassified
Blautia wexlerae · GCF_013301775
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301775#G4476_RS02845Stable P2CS identifier used across views.
GenomeGCF_013301775Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 532 aa (34.6%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
437-479 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:437:0.000000000696:479:43:423 HTH_AraC#3
500-529 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:500:0.000000155:529:30:42- Raw architecture: Response_reg:6:6.93e-28:116:111:111#HTH_AraC:437:0.000000000696:479:43:42#HTH_AraC:500:0.000000155:529:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301775::NZ_JAAIOX010000006.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4990-8460Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4476_02860RefSeq proteinWP_173684386.1
Context group ID
GCF_013301775::NZ_JAAIOX010000006.1::G00053Context members
G4476_RS02845G4476_RS02850
Partner locus tags
G4476_RS02845G4476_RS02850
Partner old locus tags
G4476_02860G4476_02865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173684386.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4476_RS02845Primary locus identifier stored in the genes table.
Old locus tagG4476_02860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOX010000006.1Sequence record reported by the local genomic context database.
Genomic interval4 990-6 588 nt1 599 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 990-8 460 ntGCF_013301775::NZ_JAAIOX010000006.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301775::NZ_JAAIOX010000006.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOX010000006.1All displayed genes belong to this local TCS context.
Neighborhood span4 990-8 460 nt3 471 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 990 nt8 460 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4476_RS02845GCF_013301775#G4476_RS02845
RRunclassifiedCurrent focus
4 990-6 588 nt · Forward (+)
G4476_RS02850GCF_013301775#G4476_RS02850
HKClassic
6 661-8 460 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS09415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0108510
Simplified PFAM architecture for RROC_0108510
PFAM domain coverage: 321 / 532 aa (60.3%)
1 aa532 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[6-116] | GGDEF_2[160-291] | HTH_18[452-529]
- Domain count: 3
- Matched identifier: RROC_0108510
- Positioned domains: Response_reg 6-116 ; GGDEF_2 160-291 ; HTH_18 452-529
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS09415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301775
AssemblyASM1330177v1 · Contighaploid
Genome composition4 087 349 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 123 · HK 61 · RR 61CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key