1 Response_reg#1
5-106 aa · 102 aa · 44.9% of protein
Raw token
Response_reg:5:3.34e-21:106:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EM849_RS02650
Response regulator NarL family
Bifidobacterium tissieri · GCF_008698195
ClassRRTypeNarLLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_008698195#EM849_RS02650Stable P2CS identifier used across views.
GenomeGCF_008698195Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 227 aa (69.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
165-220 aa · 56 aa · 24.7% of protein
Raw token
HTH_LUXR:165:3.06e-21:220:56:58- Raw architecture: Response_reg:5:3.34e-21:106:102:111#HTH_LUXR:165:3.06e-21:220:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_008698195::NZ_RZUJ01000003.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54087-56066Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEM849_02650RefSeq proteinWP_150395121.1
Context group ID
GCF_008698195::NZ_RZUJ01000003.1::G00010Context members
EM849_RS02645EM849_RS02650
Partner locus tags
EM849_RS02645EM849_RS02650
Partner old locus tags
EM849_02645EM849_02650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_150395121.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEM849_RS02650Primary locus identifier stored in the genes table.
Old locus tagEM849_02650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RZUJ01000003.1Sequence record reported by the local genomic context database.
Genomic interval55 383-56 066 nt684 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 087-56 066 ntGCF_008698195::NZ_RZUJ01000003.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_008698195::NZ_RZUJ01000003.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RZUJ01000003.1All displayed genes belong to this local TCS context.
Neighborhood span54 087-56 066 nt1 980 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 087 nt56 066 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EM849_RS02645GCF_008698195#EM849_RS02645
HKClassic
54 087-55 334 nt · Forward (+)
EM849_RS02650GCF_008698195#EM849_RS02650
RRNarLCurrent focus
55 383-56 066 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_008698195#EM849_RS02650The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1371062
Simplified PFAM architecture for RROC_1371062
PFAM domain coverage: 158 / 227 aa (69.6%)
1 aa227 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[5-107] | GerE[166-220]
- Domain count: 2
- Matched identifier: RROC_1371062
- Positioned domains: Response_reg 5-107 ; Response_reg 5-107 ; GerE 166-220 ; GerE 166-220
Cluster members and taxonomy
Representative gene: GCF_008698195#EM849_RS02650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 630 162 · GCF_008698195
AssemblyASM869819v1 · Contighaploid
Genome composition2 986 510 bp · 61,0% GCBifidobacterium tissieri
Signal transduction countsGenes 36 · HK 12 · RR 19CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key