1 Response_reg#1
5-108 aa · 104 aa · 43.7% of protein
Raw token
Response_reg:5:0.00000000000697:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0M27_RS21375
Response regulator LytTR family
Bacillus mycoides · GCF_004330345
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004330345#E0M27_RS21375Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage203 / 238 aa (85.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
136-234 aa · 99 aa · 41.6% of protein
Raw token
LytTR:136:8.15e-30:234:99:98- Raw architecture: Response_reg:5:0.00000000000697:108:106:111#LytTR:136:8.15e-30:234:99:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004330345::NZ_SJQD01000013.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span92625-93341Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE0M27_21375RefSeq proteinWP_131247042.1
Context group ID
GCF_004330345::NZ_SJQD01000013.1::G00013Context members
E0M27_RS21375
Partner locus tags
E0M27_RS21375
Partner old locus tags
E0M27_21375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131247042.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0M27_RS21375Primary locus identifier stored in the genes table.
Old locus tagE0M27_21375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SJQD01000013.1Sequence record reported by the local genomic context database.
Genomic interval92 625-93 341 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 625-93 341 ntGCF_004330345::NZ_SJQD01000013.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004330345::NZ_SJQD01000013.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SJQD01000013.1All displayed genes belong to this local TCS context.
Neighborhood span92 625-93 341 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 625 nt93 341 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0M27_RS21375GCF_004330345#E0M27_RS21375
RRLytTRCurrent focus
92 625-93 341 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004330345#E0M27_RS21375The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0941511
Simplified PFAM architecture for RROC_0941511
PFAM domain coverage: 204 / 238 aa (85.7%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-109] | LytTR[137-235]
- Domain count: 2
- Matched identifier: RROC_0941511
- Positioned domains: Response_reg 5-109 ; Response_reg 5-109 ; LytTR 137-235 ; LytTR 137-235
Cluster members and taxonomy
Representative gene: GCF_004330345#E0M27_RS21375
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_004330345
AssemblyASM433034v1 · Contighaploid
Genome composition5 472 616 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key