1 HisKA#1
208-271 aa · 64 aa · 15.3% of protein
Raw token
HisKA:208:0.000000000000626:271:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0M27_RS01485
Histidine kinase, Classic
Bacillus mycoides · GCF_004330345
ClassHKTypeClassicLength418 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004330345#E0M27_RS01485Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length418 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 418 aa (38.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa418 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
323-417 aa · 95 aa · 22.7% of protein
Raw token
HATPase_c:323:2.51e-21:417:98:109- Raw architecture: HisKA:208:0.000000000000626:271:64:64#HATPase_c:323:2.51e-21:417:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004330345::NZ_SJQD01000001.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span305675-306931Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE0M27_01485RefSeq proteinWP_002014074.1
Context group ID
GCF_004330345::NZ_SJQD01000001.1::G00031Context members
E0M27_RS01485
Partner locus tags
E0M27_RS01485
Partner old locus tags
E0M27_01485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002014074.1Primary protein accession used for annex mappings.
UniProt accessionJ8I7U3Primary UniProt accession resolved in the annex database.
UniProt IDJ8I7U3_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0M27_RS01485Primary locus identifier stored in the genes table.
Old locus tagE0M27_01485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SJQD01000001.1Sequence record reported by the local genomic context database.
Genomic interval305 675-306 931 nt1 257 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span305 675-306 931 ntGCF_004330345::NZ_SJQD01000001.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004330345::NZ_SJQD01000001.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SJQD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span305 675-306 931 nt1 257 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
305 675 nt306 931 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
E0M27_RS01485GCF_004330345#E0M27_RS01485
HKClassicCurrent focus
305 675-306 931 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS15460Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2285119
Simplified PFAM architecture for HKOC_2285119
PFAM domain coverage: 163 / 418 aa (39.0%)
1 aa418 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-270] | HATPase_c[318-417]
- Domain count: 2
- Matched identifier: HKOC_2285119
- Positioned domains: HisKA 208-270 ; HATPase_c 318-417
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS15460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_004330345
AssemblyASM433034v1 · Contighaploid
Genome composition5 472 616 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key