1 PocR#1
7-75 aa · 69 aa · 11.7% of protein
Raw token
PocR:7:0.00000116:75:104:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0M27_RS01235
Histidine kinase, Classic
Bacillus mycoides · GCF_004330345
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_004330345#E0M27_RS01235Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage415 / 589 aa (70.5%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation5 items
2 PAS#2
129-204 aa · 76 aa · 12.9% of protein
Raw token
PAS:129:0.000000031:204:87:1133 PAS_4#3
248-351 aa · 104 aa · 17.7% of protein
Raw token
PAS_4:248:0.000000000000226:351:109:1104 HisKA#4
365-427 aa · 63 aa · 10.7% of protein
Raw token
HisKA:365:0.000000000000352:427:63:645 HATPase_c#5
472-574 aa · 103 aa · 17.5% of protein
Raw token
HATPase_c:472:4.54e-25:574:106:109- Raw architecture: PocR:7:0.00000116:75:104:162#PAS:129:0.000000031:204:87:113#PAS_4:248:0.000000000000226:351:109:110#HisKA:365:0.000000000000352:427:63:64#HATPase_c:472:4.54e-25:574:106:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_004330345::NZ_SJQD01000001.1::G00029
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span259920-263951Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE0M27_01235RefSeq proteinWP_131245372.1
Context group ID
GCF_004330345::NZ_SJQD01000001.1::G00029Context members
E0M27_RS01235E0M27_RS01240E0M27_RS01245
Partner locus tags
E0M27_RS01235E0M27_RS01240E0M27_RS01245
Partner old locus tags
E0M27_01235E0M27_01240E0M27_01245
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_131245372.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0M27_RS01235Primary locus identifier stored in the genes table.
Old locus tagE0M27_01235Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SJQD01000001.1Sequence record reported by the local genomic context database.
Genomic interval259 920-261 689 nt1 770 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span259 920-263 951 ntGCF_004330345::NZ_SJQD01000001.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004330345::NZ_SJQD01000001.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SJQD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span259 920-263 951 nt4 032 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
259 920 nt263 951 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
E0M27_RS01235GCF_004330345#E0M27_RS01235
HKClassicCurrent focus
259 920-261 689 nt · Forward (+)
E0M27_RS01240GCF_004330345#E0M27_RS01240
RROmpR
262 183-262 896 nt · Forward (+)
E0M27_RS01245GCF_004330345#E0M27_RS01245
HKClassic
262 893-263 951 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004330345#E0M27_RS01235The current gene is the representative for this cluster.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1116329
Simplified PFAM architecture for HKOC_1116329
PFAM domain coverage: 321 / 589 aa (54.5%)
1 aa589 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[130-181] | PAS_4[248-351] | HisKA[366-426] | HATPase_c[472-575]
- Domain count: 4
- Matched identifier: HKOC_1116329
- Positioned domains: PAS 130-181 ; PAS_4 248-351 ; HisKA 366-426 ; HATPase_c 472-575
Cluster members and taxonomy
Representative gene: GCF_004330345#E0M27_RS01235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_004330345
AssemblyASM433034v1 · Contighaploid
Genome composition5 472 616 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key