1 Response_reg#1
4-114 aa · 111 aa · 49.6% of protein
Raw token
Response_reg:4:1.35e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
E0M27_RS01445
Response regulator OmpR family
Bacillus mycoides · GCF_004330345
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004330345#E0M27_RS01445Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 224 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-220 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:147:3.29e-27:220:76:77- Raw architecture: Response_reg:4:1.35e-34:114:111:111#Trans_reg_C:147:3.29e-27:220:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004330345::NZ_SJQD01000001.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span296921-298959Genomic interval covered by the local TCS group.
Identifiers
Old locus tagE0M27_01445RefSeq proteinWP_002084315.1
Context group ID
GCF_004330345::NZ_SJQD01000001.1::G00030Context members
E0M27_RS01445E0M27_RS01450
Partner locus tags
E0M27_RS01445E0M27_RS01450
Partner old locus tags
E0M27_01445E0M27_01450
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002084315.1Primary protein accession used for annex mappings.
UniProt accessionA0A0D6T529Primary UniProt accession resolved in the annex database.
UniProt IDA0A0D6T529_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagE0M27_RS01445Primary locus identifier stored in the genes table.
Old locus tagE0M27_01445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_SJQD01000001.1Sequence record reported by the local genomic context database.
Genomic interval296 921-297 595 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span296 921-298 959 ntGCF_004330345::NZ_SJQD01000001.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004330345::NZ_SJQD01000001.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_SJQD01000001.1All displayed genes belong to this local TCS context.
Neighborhood span296 921-298 959 nt2 039 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
296 921 nt298 959 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
E0M27_RS01445GCF_004330345#E0M27_RS01445
RROmpRCurrent focus
296 921-297 595 nt · Forward (+)
E0M27_RS01450GCF_004330345#E0M27_RS01450
HKClassic
297 592-298 959 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290975#IC3_RS09140Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1530443
Simplified PFAM architecture for RROC_1530443
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1530443
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-220 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_000290975#IC3_RS09140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_004330345
AssemblyASM433034v1 · Contighaploid
Genome composition5 472 616 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 131 · HK 71 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key