1 HisKA_3#1
155-224 aa · 70 aa · 19.1% of protein
Raw token
HisKA_3:155:4.37e-21:224:70:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYQ20_RS12205
Histidine kinase, Classic
Enterococcus faecalis · GCF_004126865
ClassHKTypeClassicLength367 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004126865#CYQ20_RS12205Stable P2CS identifier used across views.
GenomeGCF_004126865Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length367 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 367 aa (44.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa367 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
262-353 aa · 92 aa · 25.1% of protein
Raw token
HATPase_c:262:1.23e-18:353:105:109- Raw architecture: HisKA_3:155:4.37e-21:224:70:68#HATPase_c:262:1.23e-18:353:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004126865::NZ_PJXH01000008.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15413-17123Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYQ20_12225RefSeq proteinWP_104854180.1
Context group ID
GCF_004126865::NZ_PJXH01000008.1::G00015Context members
CYQ20_RS12200CYQ20_RS12205
Partner locus tags
CYQ20_RS12200CYQ20_RS12205
Partner old locus tags
CYQ20_12220CYQ20_12225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_104854180.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYQ20_RS12205Primary locus identifier stored in the genes table.
Old locus tagCYQ20_12225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJXH01000008.1Sequence record reported by the local genomic context database.
Genomic interval16 020-17 123 nt1 104 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span15 413-17 123 ntGCF_004126865::NZ_PJXH01000008.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004126865::NZ_PJXH01000008.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJXH01000008.1All displayed genes belong to this local TCS context.
Neighborhood span15 413-17 123 nt1 711 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 413 nt17 123 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CYQ20_RS12200GCF_004126865#CYQ20_RS12200
RRNarL
15 413-16 045 nt · Reverse (-)
CYQ20_RS12205GCF_004126865#CYQ20_RS12205
HKClassicCurrent focus
16 020-17 123 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002946755#CUS33_RS03875Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2706627
Simplified PFAM architecture for HKOC_2706627
PFAM domain coverage: 161 / 367 aa (43.9%)
1 aa367 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[155-223] | HATPase_c[262-353]
- Domain count: 2
- Matched identifier: HKOC_2706627
- Positioned domains: HisKA_3 155-223 ; HATPase_c 262-353
Cluster members and taxonomy
Representative gene: GCF_002946755#CUS33_RS03875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_004126865
AssemblyASM412686v1 · Contighaploid
Genome composition2 763 117 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key