1 Response_reg#1
4-112 aa · 109 aa · 46.2% of protein
Raw token
Response_reg:4:3.12e-38:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYQ20_RS01955
Response regulator OmpR family
Enterococcus faecalis · GCF_004126865
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004126865#CYQ20_RS01955Stable P2CS identifier used across views.
GenomeGCF_004126865Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 236 aa (78.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-231 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:155:4.21e-36:231:77:77- Raw architecture: Response_reg:4:3.12e-38:112:109:111#Trans_reg_C:155:4.21e-36:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004126865::NZ_PJXH01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span390852-393331Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYQ20_01955RefSeq proteinWP_002360193.1
Context group ID
GCF_004126865::NZ_PJXH01000001.1::G00005Context members
CYQ20_RS01950CYQ20_RS01955
Partner locus tags
CYQ20_RS01950CYQ20_RS01955
Partner old locus tags
CYQ20_01950CYQ20_01955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002360193.1Primary protein accession used for annex mappings.
UniProt accessionA0ABC9P5F9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABC9P5F9_ENTFLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYQ20_RS01955Primary locus identifier stored in the genes table.
Old locus tagCYQ20_01955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJXH01000001.1Sequence record reported by the local genomic context database.
Genomic interval392 621-393 331 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span390 852-393 331 ntGCF_004126865::NZ_PJXH01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004126865::NZ_PJXH01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJXH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span390 852-393 331 nt2 480 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
390 852 nt393 331 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CYQ20_RS01950GCF_004126865#CYQ20_RS01950
HKClassic
390 852-392 624 nt · Reverse (-)
CYQ20_RS01955GCF_004126865#CYQ20_RS01955
RROmpRCurrent focus
392 621-393 331 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147255#HMPREF9511_RS13915Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988453
Simplified PFAM architecture for RROC_0988453
PFAM domain coverage: 186 / 236 aa (78.8%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0988453
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000147255#HMPREF9511_RS13915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_004126865
AssemblyASM412686v1 · Contighaploid
Genome composition2 763 117 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key