1 Response_reg#1
6-89 aa · 84 aa · 34.3% of protein
Raw token
Response_reg:6:0.000012:89:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYQ20_RS01050
Response regulator LytTR family
Enterococcus faecalis · GCF_004126865
ClassRRTypeLytTRLength245 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004126865#CYQ20_RS01050Stable P2CS identifier used across views.
GenomeGCF_004126865Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length245 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 245 aa (72.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa245 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-237 aa · 93 aa · 38.0% of protein
Raw token
LytTR:145:0.000000032:237:96:98- Raw architecture: Response_reg:6:0.000012:89:86:111#LytTR:145:0.000000032:237:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004126865::NZ_PJXH01000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span220790-221527Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYQ20_01050RefSeq proteinWP_002377201.1
Context group ID
GCF_004126865::NZ_PJXH01000001.1::G00004Context members
CYQ20_RS01050
Partner locus tags
CYQ20_RS01050
Partner old locus tags
CYQ20_01050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002377201.1Primary protein accession used for annex mappings.
UniProt accessionA0A8B3RRD3Primary UniProt accession resolved in the annex database.
UniProt IDA0A8B3RRD3_ENTFLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYQ20_RS01050Primary locus identifier stored in the genes table.
Old locus tagCYQ20_01050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJXH01000001.1Sequence record reported by the local genomic context database.
Genomic interval220 790-221 527 nt738 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span220 790-221 527 ntGCF_004126865::NZ_PJXH01000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004126865::NZ_PJXH01000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJXH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span220 790-221 527 nt738 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
220 790 nt221 527 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CYQ20_RS01050GCF_004126865#CYQ20_RS01050
RRLytTRCurrent focus
220 790-221 527 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000157415#EFKG_RS13655Use this link to inspect the representative gene detail.
PFAM architectureLytTR1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0789489
Simplified PFAM architecture for RROC_0789489
PFAM domain coverage: 94 / 245 aa (38.4%)
1 aa245 aa
LytTR
- Simplified architecture: LytTR
- Raw architecture: LytTR[146-239]
- Domain count: 1
- Matched identifier: RROC_0789489
- Positioned domains: LytTR 146-239 ; LytTR 146-239
Cluster members and taxonomy
Representative gene: GCF_000157415#EFKG_RS13655
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_004126865
AssemblyASM412686v1 · Contighaploid
Genome composition2 763 117 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key