1 Response_reg#1
3-123 aa · 121 aa · 49.8% of protein
Raw token
Response_reg:3:0.0000145:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYQ20_RS00975
Response regulator LytTR family
Enterococcus faecalis · GCF_004126865
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_004126865#CYQ20_RS00975Stable P2CS identifier used across views.
GenomeGCF_004126865Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage214 / 243 aa (88.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-241 aa · 93 aa · 38.3% of protein
Raw token
LytTR:149:6.8e-21:241:98:98- Raw architecture: Response_reg:3:0.0000145:123:121:111#LytTR:149:6.8e-21:241:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_004126865::NZ_PJXH01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span203046-203777Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYQ20_00975RefSeq proteinWP_104854072.1
Context group ID
GCF_004126865::NZ_PJXH01000001.1::G00003Context members
CYQ20_RS00975
Partner locus tags
CYQ20_RS00975
Partner old locus tags
CYQ20_00975
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_104854072.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYQ20_RS00975Primary locus identifier stored in the genes table.
Old locus tagCYQ20_00975Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJXH01000001.1Sequence record reported by the local genomic context database.
Genomic interval203 046-203 777 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span203 046-203 777 ntGCF_004126865::NZ_PJXH01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004126865::NZ_PJXH01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJXH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span203 046-203 777 nt732 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
203 046 nt203 777 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
CYQ20_RS00975GCF_004126865#CYQ20_RS00975
RRLytTRCurrent focus
203 046-203 777 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002946755#CUS33_RS02890Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0828918
Simplified PFAM architecture for RROC_0828918
PFAM domain coverage: 196 / 243 aa (80.7%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[16-121] | LytTR[151-240]
- Domain count: 2
- Matched identifier: RROC_0828918
- Positioned domains: Response_reg 16-121 ; Response_reg 16-121 ; LytTR 151-240 ; LytTR 151-240
Cluster members and taxonomy
Representative gene: GCF_002946755#CUS33_RS02890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_004126865
AssemblyASM412686v1 · Contighaploid
Genome composition2 763 117 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key