1 HisKA#1
119-178 aa · 60 aa · 17.6% of protein
Raw token
HisKA:119:0.000000064:178:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYQ20_RS09600
Histidine kinase, Classic
Enterococcus faecalis · GCF_004126865
ClassHKTypeClassicLength341 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004126865#CYQ20_RS09600Stable P2CS identifier used across views.
GenomeGCF_004126865Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length341 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 341 aa (49.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa341 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
223-332 aa · 110 aa · 32.3% of protein
Raw token
HATPase_c:223:3.53e-28:332:110:109- Raw architecture: HisKA:119:0.000000064:178:62:64#HATPase_c:223:3.53e-28:332:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004126865::NZ_PJXH01000005.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span91006-92719Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYQ20_09625RefSeq proteinWP_104854543.1
Context group ID
GCF_004126865::NZ_PJXH01000005.1::G00013Context members
CYQ20_RS09595CYQ20_RS09600
Partner locus tags
CYQ20_RS09595CYQ20_RS09600
Partner old locus tags
CYQ20_09620CYQ20_09625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_104854543.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYQ20_RS09600Primary locus identifier stored in the genes table.
Old locus tagCYQ20_09625Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJXH01000005.1Sequence record reported by the local genomic context database.
Genomic interval91 694-92 719 nt1 026 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span91 006-92 719 ntGCF_004126865::NZ_PJXH01000005.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004126865::NZ_PJXH01000005.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJXH01000005.1All displayed genes belong to this local TCS context.
Neighborhood span91 006-92 719 nt1 714 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
91 006 nt92 719 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CYQ20_RS09595GCF_004126865#CYQ20_RS09595
RROmpR
91 006-91 680 nt · Forward (+)
CYQ20_RS09600GCF_004126865#CYQ20_RS09600
HKClassicCurrent focus
91 694-92 719 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002946755#CUS33_RS06765Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2834467
Simplified PFAM architecture for HKOC_2834467
PFAM domain coverage: 109 / 341 aa (32.0%)
1 aa341 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[224-332]
- Domain count: 1
- Matched identifier: HKOC_2834467
- Positioned domains: HATPase_c 224-332
Cluster members and taxonomy
Representative gene: GCF_002946755#CUS33_RS06765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_004126865
AssemblyASM412686v1 · Contighaploid
Genome composition2 763 117 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key