1 Response_reg#1
4-113 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:4:1.79e-39:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
CYQ20_RS04095
Response regulator OmpR family
Enterococcus faecalis · GCF_004126865
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_004126865#CYQ20_RS04095Stable P2CS identifier used across views.
GenomeGCF_004126865Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 234 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-228 aa · 77 aa · 32.9% of protein
Raw token
Trans_reg_C:152:1.52e-34:228:77:77- Raw architecture: Response_reg:4:1.79e-39:113:111:111#Trans_reg_C:152:1.52e-34:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_004126865::NZ_PJXH01000001.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span825605-828145Genomic interval covered by the local TCS group.
Identifiers
Old locus tagCYQ20_04100RefSeq proteinWP_129317341.1
Context group ID
GCF_004126865::NZ_PJXH01000001.1::G00009Context members
CYQ20_RS04090CYQ20_RS04095
Partner locus tags
CYQ20_RS04090CYQ20_RS04095
Partner old locus tags
CYQ20_04095CYQ20_04100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_129317341.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagCYQ20_RS04095Primary locus identifier stored in the genes table.
Old locus tagCYQ20_04100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_PJXH01000001.1Sequence record reported by the local genomic context database.
Genomic interval827 441-828 145 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span825 605-828 145 ntGCF_004126865::NZ_PJXH01000001.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_004126865::NZ_PJXH01000001.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_PJXH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span825 605-828 145 nt2 541 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
825 605 nt828 145 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
CYQ20_RS04090GCF_004126865#CYQ20_RS04090
HKClassic
825 605-827 434 nt · Reverse (-)
CYQ20_RS04095GCF_004126865#CYQ20_RS04095
RROmpRCurrent focus
827 441-828 145 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004126865#CYQ20_RS04095The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1056555
Simplified PFAM architecture for RROC_1056555
PFAM domain coverage: 187 / 234 aa (79.9%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1056555
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_004126865#CYQ20_RS04095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_004126865
AssemblyASM412686v1 · Contighaploid
Genome composition2 763 117 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 27 · HK 12 · RR 15CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key