1 HAMP#1
42-107 aa · 66 aa · 18.9% of protein
Raw token
HAMP:42:0.0000000000000366:107:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D8Q48_RS09730
Histidine kinase, Classic
Ruminococcus sp. B05 · GCF_003628495
ClassHKTypeClassicLength350 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003628495#D8Q48_RS09730Stable P2CS identifier used across views.
GenomeGCF_003628495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length350 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 350 aa (70.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa350 aa
Domain-by-domain annotation3 items
2 HisKA#2
118-185 aa · 68 aa · 19.4% of protein
Raw token
HisKA:118:1.72e-16:185:68:643 HATPase_c#3
233-345 aa · 113 aa · 32.3% of protein
Raw token
HATPase_c:233:1.07e-32:345:113:109- Raw architecture: HAMP:42:0.0000000000000366:107:66:69#HisKA:118:1.72e-16:185:68:64#HATPase_c:233:1.07e-32:345:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003628495::NZ_RBZR01000011.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span60910-62651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD8Q48_09730RefSeq proteinWP_117990995.1
Context group ID
GCF_003628495::NZ_RBZR01000011.1::G00001Context members
D8Q48_RS09725D8Q48_RS09730
Partner locus tags
D8Q48_RS09725D8Q48_RS09730
Partner old locus tags
D8Q48_09725D8Q48_09730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117990995.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7G4D7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7G4D7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD8Q48_RS09730Primary locus identifier stored in the genes table.
Old locus tagD8Q48_09730Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RBZR01000011.1Sequence record reported by the local genomic context database.
Genomic interval61 599-62 651 nt1 053 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 910-62 651 ntGCF_003628495::NZ_RBZR01000011.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003628495::NZ_RBZR01000011.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RBZR01000011.1All displayed genes belong to this local TCS context.
Neighborhood span60 910-62 651 nt1 742 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 910 nt62 651 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D8Q48_RS09725GCF_003628495#D8Q48_RS09725
RROmpR
60 910-61 602 nt · Reverse (-)
D8Q48_RS09730GCF_003628495#D8Q48_RS09730
HKClassicCurrent focus
61 599-62 651 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS09730The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2797922
Simplified PFAM architecture for HKOC_2797922
PFAM domain coverage: 228 / 350 aa (65.1%)
1 aa350 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[55-106] | HisKA[119-184] | HATPase_c[233-342]
- Domain count: 3
- Matched identifier: HKOC_2797922
- Positioned domains: HAMP 55-106 ; HisKA 119-184 ; HATPase_c 233-342
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS09730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 448 031 · GCF_003628495
AssemblyASM362849v1 · Contighaploid
Genome composition3 576 560 bp · 38,5% GCRuminococcus sp. B05
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key