1 Response_reg#1
6-121 aa · 116 aa · 44.3% of protein
Raw token
Response_reg:6:6.27e-25:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D8Q48_RS02615
Response regulator Spo0A family
Ruminococcus sp. B05 · GCF_003628495
ClassRRTypeSpo0ALength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003628495#D8Q48_RS02615Stable P2CS identifier used across views.
GenomeGCF_003628495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 262 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
152-255 aa · 104 aa · 39.7% of protein
Raw token
Spo0A_C:152:5.98e-66:255:104:104- Raw architecture: Response_reg:6:6.27e-25:121:116:111#Spo0A_C:152:5.98e-66:255:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003628495::NZ_RBZR01000001.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span606828-607616Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD8Q48_02615RefSeq proteinWP_121055287.1
Context group ID
GCF_003628495::NZ_RBZR01000001.1::G00016Context members
D8Q48_RS02615
Partner locus tags
D8Q48_RS02615
Partner old locus tags
D8Q48_02615
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_121055287.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD8Q48_RS02615Primary locus identifier stored in the genes table.
Old locus tagD8Q48_02615Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RBZR01000001.1Sequence record reported by the local genomic context database.
Genomic interval606 828-607 616 nt789 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span606 828-607 616 ntGCF_003628495::NZ_RBZR01000001.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003628495::NZ_RBZR01000001.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RBZR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span606 828-607 616 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
606 828 nt607 616 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D8Q48_RS02615GCF_003628495#D8Q48_RS02615
RRSpo0ACurrent focus
606 828-607 616 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS02615The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0645189
Simplified PFAM architecture for RROC_0645189
PFAM domain coverage: 220 / 262 aa (84.0%)
1 aa262 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-121] | Spo0A_C[152-255]
- Domain count: 2
- Matched identifier: RROC_0645189
- Positioned domains: Response_reg 6-121 ; Response_reg 6-121 ; Spo0A_C 152-255 ; Spo0A_C 152-255
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS02615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 448 031 · GCF_003628495
AssemblyASM362849v1 · Contighaploid
Genome composition3 576 560 bp · 38,5% GCRuminococcus sp. B05
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key