1 HisKA#1
85-146 aa · 62 aa · 20.5% of protein
Raw token
HisKA:85:0.0000000000216:146:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D8Q48_RS00185
Histidine kinase, Classic
Ruminococcus sp. B05 · GCF_003628495
ClassHKTypeClassicLength302 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003628495#D8Q48_RS00185Stable P2CS identifier used across views.
GenomeGCF_003628495Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 302 aa (57.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
191-300 aa · 110 aa · 36.4% of protein
Raw token
HATPase_c:191:3.29e-27:300:110:109- Raw architecture: HisKA:85:0.0000000000216:146:62:64#HATPase_c:191:3.29e-27:300:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003628495::NZ_RBZR01000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span44683-46271Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD8Q48_00185RefSeq proteinWP_117989348.1
Context group ID
GCF_003628495::NZ_RBZR01000001.1::G00012Context members
D8Q48_RS00180D8Q48_RS00185
Partner locus tags
D8Q48_RS00180D8Q48_RS00185
Partner old locus tags
D8Q48_00180D8Q48_00185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117989348.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD8Q48_RS00185Primary locus identifier stored in the genes table.
Old locus tagD8Q48_00185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_RBZR01000001.1Sequence record reported by the local genomic context database.
Genomic interval45 363-46 271 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 683-46 271 ntGCF_003628495::NZ_RBZR01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003628495::NZ_RBZR01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_RBZR01000001.1All displayed genes belong to this local TCS context.
Neighborhood span44 683-46 271 nt1 589 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 683 nt46 271 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D8Q48_RS00180GCF_003628495#D8Q48_RS00180
RROmpR
44 683-45 366 nt · Forward (+)
D8Q48_RS00185GCF_003628495#D8Q48_RS00185
HKClassicCurrent focus
45 363-46 271 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003628495#D8Q48_RS00185The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884958
Simplified PFAM architecture for HKOC_2884958
PFAM domain coverage: 170 / 302 aa (56.3%)
1 aa302 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-146] | HATPase_c[191-298]
- Domain count: 2
- Matched identifier: HKOC_2884958
- Positioned domains: HisKA 85-146 ; HATPase_c 191-298
Cluster members and taxonomy
Representative gene: GCF_003628495#D8Q48_RS00185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 448 031 · GCF_003628495
AssemblyASM362849v1 · Contighaploid
Genome composition3 576 560 bp · 38,5% GCRuminococcus sp. B05
Signal transduction countsGenes 81 · HK 42 · RR 38CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusRuminococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Ruminococcus
Related genes
Preview from the same derived genome key