1 PAS_9#1
351-454 aa · 104 aa · 10.5% of protein
Raw token
PAS_9:351:0.000072:454:107:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS13310
Histidine kinase, Hybrid
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeHybridLength987 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS13310Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_cResponse_reg
Protein length987 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage520 / 987 aa (52.7%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa987 aa
Domain-by-domain annotation5 items
2 HisKA#2
475-541 aa · 67 aa · 6.8% of protein
Raw token
HisKA:475:7.07e-18:541:67:643 HATPase_c#3
589-705 aa · 117 aa · 11.9% of protein
Raw token
HATPase_c:589:6.17e-34:705:117:1094 Response_reg#4
725-838 aa · 114 aa · 11.6% of protein
Raw token
Response_reg:725:8.65e-20:838:114:1115 Response_reg#5
866-983 aa · 118 aa · 12.0% of protein
Raw token
Response_reg:866:4.58e-31:983:118:111- Raw architecture: PAS_9:351:0.000072:454:107:102#HisKA:475:7.07e-18:541:67:64#HATPase_c:589:6.17e-34:705:117:109#Response_reg:725:8.65e-20:838:114:111#Response_reg:866:4.58e-31:983:118:111
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000029.1::G00021
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span14571-17534Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_13315RefSeq proteinWP_119215031.1
Context group ID
GCF_003481925::NZ_QUMC01000029.1::G00021Context members
DXB00_RS13310
Partner locus tags
DXB00_RS13310
Partner old locus tags
DXB00_13315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119215031.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS13310Primary locus identifier stored in the genes table.
Old locus tagDXB00_13315Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000029.1Sequence record reported by the local genomic context database.
Genomic interval14 571-17 534 nt2 964 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 571-17 534 ntGCF_003481925::NZ_QUMC01000029.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000029.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000029.1All displayed genes belong to this local TCS context.
Neighborhood span14 571-17 534 nt2 964 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 571 nt17 534 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS13310GCF_003481925#DXB00_RS13310
HKHybridCurrent focus
14 571-17 534 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS13310The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0299248
Simplified PFAM architecture for HKOC_0299248
PFAM domain coverage: 414 / 987 aa (41.9%)
1 aa987 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[475-541] | HATPase_c[589-705] | Response_reg[725-837] | Response_reg[866-982]
- Domain count: 4
- Matched identifier: HKOC_0299248
- Positioned domains: HisKA 475-541 ; HATPase_c 589-705 ; Response_reg 725-837 ; Response_reg 866-982
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS13310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key