1 HisKA#1
339-403 aa · 65 aa · 10.7% of protein
Raw token
HisKA:339:9.92e-17:403:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS00910
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength608 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS00910Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length608 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage136 / 608 aa (22.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa608 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
446-516 aa · 71 aa · 11.7% of protein
Raw token
HATPase_c:446:0.0000000000149:516:74:109- Raw architecture: HisKA:339:9.92e-17:403:65:64#HATPase_c:446:0.0000000000149:516:74:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span169540-172048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_00915RefSeq proteinWP_119214405.1
Context group ID
GCF_003481925::NZ_QUMC01000001.1::G00001Context members
DXB00_RS00905DXB00_RS00910
Partner locus tags
DXB00_RS00905DXB00_RS00910
Partner old locus tags
DXB00_00910DXB00_00915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119214405.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS00910Primary locus identifier stored in the genes table.
Old locus tagDXB00_00915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000001.1Sequence record reported by the local genomic context database.
Genomic interval170 222-172 048 nt1 827 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span169 540-172 048 ntGCF_003481925::NZ_QUMC01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span169 540-172 048 nt2 509 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
169 540 nt172 048 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS00905GCF_003481925#DXB00_RS00905
RROmpR
169 540-170 238 nt · Forward (+)
DXB00_RS00910GCF_003481925#DXB00_RS00910
HKClassicCurrent focus
170 222-172 048 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS00910The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1014567
Simplified PFAM architecture for HKOC_1014567
PFAM domain coverage: 135 / 608 aa (22.2%)
1 aa608 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[339-403] | HATPase_c[447-516]
- Domain count: 2
- Matched identifier: HKOC_1014567
- Positioned domains: HisKA 339-403 ; HATPase_c 447-516
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS00910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key