1 Response_reg#1
5-116 aa · 112 aa · 48.3% of protein
Raw token
Response_reg:5:2.05e-31:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS00905
Response regulator OmpR family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS00905Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 232 aa (80.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 31.9% of protein
Raw token
Trans_reg_C:150:4.05e-29:223:77:77- Raw architecture: Response_reg:5:2.05e-31:116:113:111#Trans_reg_C:150:4.05e-29:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span169540-172048Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_00910RefSeq proteinWP_118728859.1
Context group ID
GCF_003481925::NZ_QUMC01000001.1::G00001Context members
DXB00_RS00905DXB00_RS00910
Partner locus tags
DXB00_RS00905DXB00_RS00910
Partner old locus tags
DXB00_00910DXB00_00915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118728859.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS00905Primary locus identifier stored in the genes table.
Old locus tagDXB00_00910Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000001.1Sequence record reported by the local genomic context database.
Genomic interval169 540-170 238 nt699 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span169 540-172 048 ntGCF_003481925::NZ_QUMC01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000001.1All displayed genes belong to this local TCS context.
Neighborhood span169 540-172 048 nt2 509 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
169 540 nt172 048 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS00905GCF_003481925#DXB00_RS00905
RROmpRCurrent focus
169 540-170 238 nt · Forward (+)
DXB00_RS00910GCF_003481925#DXB00_RS00910
HKClassic
170 222-172 048 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS01240Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1129497
Simplified PFAM architecture for RROC_1129497
PFAM domain coverage: 185 / 232 aa (79.7%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1129497
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS01240
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key