1 HAMP#1
172-238 aa · 67 aa · 11.3% of protein
Raw token
HAMP:172:4.8e-18:238:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS12020
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS12020Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPPAS_4HisKAHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage343 / 591 aa (58.0%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation4 items
2 PAS_4#2
256-351 aa · 96 aa · 16.2% of protein
Raw token
PAS_4:256:0.00000000103:351:108:1103 HisKA#3
355-423 aa · 69 aa · 11.7% of protein
Raw token
HisKA:355:4.82e-20:423:69:644 HATPase_c#4
469-579 aa · 111 aa · 18.8% of protein
Raw token
HATPase_c:469:3.72e-36:579:112:109- Raw architecture: HAMP:172:4.8e-18:238:67:69#PAS_4:256:0.00000000103:351:108:110#HisKA:355:4.82e-20:423:69:64#HATPase_c:469:3.72e-36:579:112:109
- Domain description: 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000024.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7684-10158Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_12025RefSeq proteinWP_118729138.1
Context group ID
GCF_003481925::NZ_QUMC01000024.1::G00019Context members
DXB00_RS12015DXB00_RS12020
Partner locus tags
DXB00_RS12015DXB00_RS12020
Partner old locus tags
DXB00_12020DXB00_12025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729138.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS12020Primary locus identifier stored in the genes table.
Old locus tagDXB00_12025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000024.1Sequence record reported by the local genomic context database.
Genomic interval8 383-10 158 nt1 776 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 684-10 158 ntGCF_003481925::NZ_QUMC01000024.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000024.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000024.1All displayed genes belong to this local TCS context.
Neighborhood span7 684-10 158 nt2 475 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 684 nt10 158 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS12015GCF_003481925#DXB00_RS12015
RROmpR
7 684-8 379 nt · Forward (+)
DXB00_RS12020GCF_003481925#DXB00_RS12020
HKClassicCurrent focus
8 383-10 158 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS03760Use this link to inspect the representative gene detail.
PFAM architectureHAMP + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1106413
Simplified PFAM architecture for HKOC_1106413
PFAM domain coverage: 329 / 591 aa (55.7%)
1 aa591 aa
HAMPPAS_4HisKAHATPase_c
- Simplified architecture: HAMP + PAS_4 + HisKA + HATPase_c
- Raw architecture: HAMP[186-237] | PAS_4[256-351] | HisKA[355-423] | HATPase_c[469-580]
- Domain count: 4
- Matched identifier: HKOC_1106413
- Positioned domains: HAMP 186-237 ; PAS_4 256-351 ; HisKA 355-423 ; HATPase_c 469-580
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS03760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key