1 HAMP#1
172-238 aa · 67 aa · 11.3% of protein
Raw token
HAMP:172:4.8e-18:238:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW806_RS03760
Histidine kinase, Classic
Butyricicoccus sp. AM32-19 · GCF_003480365
ClassHKTypeClassicLength591 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003480365#DW806_RS03760Stable P2CS identifier used across views.
GenomeGCF_003480365Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPPAS_4HisKAHATPase_c
Protein length591 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage343 / 591 aa (58.0%)Merged over positioned domains only.
Domain description1 HAMP,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa591 aa
Domain-by-domain annotation4 items
2 PAS_4#2
256-351 aa · 96 aa · 16.2% of protein
Raw token
PAS_4:256:0.00000000103:351:108:1103 HisKA#3
355-423 aa · 69 aa · 11.7% of protein
Raw token
HisKA:355:4.82e-20:423:69:644 HATPase_c#4
469-579 aa · 111 aa · 18.8% of protein
Raw token
HATPase_c:469:3.72e-36:579:112:109- Raw architecture: HAMP:172:4.8e-18:238:67:69#PAS_4:256:0.00000000103:351:108:110#HisKA:355:4.82e-20:423:69:64#HATPase_c:469:3.72e-36:579:112:109
- Domain description: 1 HAMP,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003480365::NZ_QUIX01000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span375043-377517Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW806_03760RefSeq proteinWP_118729138.1
Context group ID
GCF_003480365::NZ_QUIX01000002.1::G00023Context members
DW806_RS03760DW806_RS03765
Partner locus tags
DW806_RS03760DW806_RS03765
Partner old locus tags
DW806_03760DW806_03765
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118729138.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW806_RS03760Primary locus identifier stored in the genes table.
Old locus tagDW806_03760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUIX01000002.1Sequence record reported by the local genomic context database.
Genomic interval375 043-376 818 nt1 776 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span375 043-377 517 ntGCF_003480365::NZ_QUIX01000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003480365::NZ_QUIX01000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUIX01000002.1All displayed genes belong to this local TCS context.
Neighborhood span375 043-377 517 nt2 475 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
375 043 nt377 517 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DW806_RS03760GCF_003480365#DW806_RS03760
HKClassicCurrent focus
375 043-376 818 nt · Reverse (-)
DW806_RS03765GCF_003480365#DW806_RS03765
RROmpR
376 822-377 517 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480365#DW806_RS03760The current gene is the representative for this cluster.
PFAM architectureHAMP + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1106413
Simplified PFAM architecture for HKOC_1106413
PFAM domain coverage: 329 / 591 aa (55.7%)
1 aa591 aa
HAMPPAS_4HisKAHATPase_c
- Simplified architecture: HAMP + PAS_4 + HisKA + HATPase_c
- Raw architecture: HAMP[186-237] | PAS_4[256-351] | HisKA[355-423] | HATPase_c[469-580]
- Domain count: 4
- Matched identifier: HKOC_1106413
- Positioned domains: HAMP 186-237 ; PAS_4 256-351 ; HisKA 355-423 ; HATPase_c 469-580
Cluster members and taxonomy
Representative gene: GCF_003480365#DW806_RS03760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 296 · GCF_003480365
AssemblyASM348036v1 · Scaffoldhaploid
Genome composition3 041 364 bp · 54,5% GCButyricicoccus sp. AM32-19
Signal transduction countsGenes 72 · HK 33 · RR 37CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key