1 HAMP#1
267-334 aa · 68 aa · 12.0% of protein
Raw token
HAMP:267:0.00000101:334:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS07985
Histidine kinase, Classic
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassHKTypeClassicLength568 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS07985Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length568 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 568 aa (45.2%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa568 aa
Domain-by-domain annotation3 items
2 His_kinase#2
350-428 aa · 79 aa · 13.9% of protein
Raw token
His_kinase:350:1.25e-28:428:79:803 HATPase_c#3
449-558 aa · 110 aa · 19.4% of protein
Raw token
HATPase_c:449:0.0000000000000218:558:110:109- Raw architecture: HAMP:267:0.00000101:334:68:69#His_kinase:350:1.25e-28:428:79:80#HATPase_c:449:0.0000000000000218:558:110:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000012.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span47058-50349Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_07990RefSeq proteinWP_119214766.1
Context group ID
GCF_003481925::NZ_QUMC01000012.1::G00007Context members
DXB00_RS07985DXB00_RS07990
Partner locus tags
DXB00_RS07985DXB00_RS07990
Partner old locus tags
DXB00_07990DXB00_07995
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119214766.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS07985Primary locus identifier stored in the genes table.
Old locus tagDXB00_07990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000012.1Sequence record reported by the local genomic context database.
Genomic interval47 058-48 764 nt1 707 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span47 058-50 349 ntGCF_003481925::NZ_QUMC01000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000012.1All displayed genes belong to this local TCS context.
Neighborhood span47 058-50 349 nt3 292 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
47 058 nt50 349 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS07985GCF_003481925#DXB00_RS07985
HKClassicCurrent focus
47 058-48 764 nt · Forward (+)
DXB00_RS07990GCF_003481925#DXB00_RS07990
RRunclassified
48 742-50 349 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS07985The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1221354
Simplified PFAM architecture for HKOC_1221354
PFAM domain coverage: 188 / 568 aa (33.1%)
1 aa568 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[350-427] | HATPase_c[449-558]
- Domain count: 2
- Matched identifier: HKOC_1221354
- Positioned domains: His_kinase 350-427 ; HATPase_c 449-558
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS07985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key