1 Response_reg#1
4-116 aa · 113 aa · 21.4% of protein
Raw token
Response_reg:4:2.62e-29:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS07120
Response regulator, unclassified
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeunclassifiedLength527 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_003481925#DXB00_RS07120Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length527 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 527 aa (36.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa527 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
433-474 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:433:0.00000000136:474:42:423 HTH_AraC#3
488-522 aa · 35 aa · 6.6% of protein
Raw token
HTH_AraC:488:0.00000000344:522:35:42- Raw architecture: Response_reg:4:2.62e-29:116:113:111#HTH_AraC:433:0.00000000136:474:42:42#HTH_AraC:488:0.00000000344:522:35:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_003481925::NZ_QUMC01000010.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span48905-51316Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_07125RefSeq proteinWP_119214703.1
Context group ID
GCF_003481925::NZ_QUMC01000010.1::G00006Context members
DXB00_RS07120DXB00_RS07125
Partner locus tags
DXB00_RS07120DXB00_RS07125
Partner old locus tags
DXB00_07125DXB00_07130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_119214703.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS07120Primary locus identifier stored in the genes table.
Old locus tagDXB00_07125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000010.1Sequence record reported by the local genomic context database.
Genomic interval48 905-50 488 nt1 584 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 905-51 316 ntGCF_003481925::NZ_QUMC01000010.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000010.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000010.1All displayed genes belong to this local TCS context.
Neighborhood span48 905-51 316 nt2 412 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 905 nt51 316 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DXB00_RS07120GCF_003481925#DXB00_RS07120
RRunclassifiedCurrent focus
48 905-50 488 nt · Forward (+)
DXB00_RS07125GCF_003481925#DXB00_RS07125
HKClassic
50 498-51 316 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS07120The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0116268
Simplified PFAM architecture for RROC_0116268
PFAM domain coverage: 190 / 527 aa (36.1%)
1 aa527 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[447-524]
- Domain count: 2
- Matched identifier: RROC_0116268
- Positioned domains: Response_reg 4-115 ; Response_reg 4-115 ; HTH_18 447-524 ; HTH_18 447-524
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS07120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key