1 Response_reg#1
3-112 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:3:0.00000000000123:112:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DXB00_RS02455
Response regulator LytTR family
Butyricicoccus sp. OF10-2 · GCF_003481925
ClassRRTypeLytTRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003481925#DXB00_RS02455Stable P2CS identifier used across views.
GenomeGCF_003481925Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 228 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 LytTR#2
129-216 aa · 88 aa · 38.6% of protein
Raw token
LytTR:129:2.26e-21:216:93:98- Raw architecture: Response_reg:3:0.00000000000123:112:113:111#LytTR:129:2.26e-21:216:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003481925::NZ_QUMC01000002.1::G00016
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span152179-152865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDXB00_02455RefSeq proteinWP_117491603.1
Context group ID
GCF_003481925::NZ_QUMC01000002.1::G00016Context members
DXB00_RS02455
Partner locus tags
DXB00_RS02455
Partner old locus tags
DXB00_02455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117491603.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDXB00_RS02455Primary locus identifier stored in the genes table.
Old locus tagDXB00_02455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUMC01000002.1Sequence record reported by the local genomic context database.
Genomic interval152 179-152 865 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span152 179-152 865 ntGCF_003481925::NZ_QUMC01000002.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003481925::NZ_QUMC01000002.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUMC01000002.1All displayed genes belong to this local TCS context.
Neighborhood span152 179-152 865 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
152 179 nt152 865 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DXB00_RS02455GCF_003481925#DXB00_RS02455
RRLytTRCurrent focus
152 179-152 865 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS06995Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314978
Simplified PFAM architecture for RROC_1314978
PFAM domain coverage: 197 / 228 aa (86.4%)
1 aa228 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-111] | LytTR[130-217]
- Domain count: 2
- Matched identifier: RROC_1314978
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; LytTR 130-217 ; LytTR 130-217
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS06995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 298 · GCF_003481925
AssemblyASM348192v1 · Scaffoldhaploid
Genome composition3 197 792 bp · 54,0% GCButyricicoccus sp. OF10-2
Signal transduction countsGenes 64 · HK 31 · RR 30CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key