1 Response_reg#1
3-112 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:3:0.00000000000123:112:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DW088_RS06995
Response regulator LytTR family
Butyricicoccus sp. AM05-1 · GCF_003474415
ClassRRTypeLytTRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_003474415#DW088_RS06995Stable P2CS identifier used across views.
GenomeGCF_003474415Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Butyricicoccaceae; Butyricicoccus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage198 / 228 aa (86.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 LytTR#2
129-216 aa · 88 aa · 38.6% of protein
Raw token
LytTR:129:2.26e-21:216:93:98- Raw architecture: Response_reg:3:0.00000000000123:112:113:111#LytTR:129:2.26e-21:216:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_003474415::NZ_QUDG01000003.1::G00015
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span201683-202369Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDW088_06990RefSeq proteinWP_117491603.1
Context group ID
GCF_003474415::NZ_QUDG01000003.1::G00015Context members
DW088_RS06995
Partner locus tags
DW088_RS06995
Partner old locus tags
DW088_06990
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117491603.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDW088_RS06995Primary locus identifier stored in the genes table.
Old locus tagDW088_06990Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QUDG01000003.1Sequence record reported by the local genomic context database.
Genomic interval201 683-202 369 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span201 683-202 369 ntGCF_003474415::NZ_QUDG01000003.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_003474415::NZ_QUDG01000003.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QUDG01000003.1All displayed genes belong to this local TCS context.
Neighborhood span201 683-202 369 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
201 683 nt202 369 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DW088_RS06995GCF_003474415#DW088_RS06995
RRLytTRCurrent focus
201 683-202 369 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003474415#DW088_RS06995The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314978
Simplified PFAM architecture for RROC_1314978
PFAM domain coverage: 197 / 228 aa (86.4%)
1 aa228 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-111] | LytTR[130-217]
- Domain count: 2
- Matched identifier: RROC_1314978
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; LytTR 130-217 ; LytTR 130-217
Cluster members and taxonomy
Representative gene: GCF_003474415#DW088_RS06995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 292 004 · GCF_003474415
AssemblyASM347441v1 · Scaffoldhaploid
Genome composition3 164 285 bp · 54,0% GCButyricicoccus sp. AM05-1
Signal transduction countsGenes 67 · HK 32 · RR 33CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyButyricicoccaceaeGenusButyricicoccus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Butyricicoccaceae7Butyricicoccus
Related genes
Preview from the same derived genome key